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Thanks,I have been able to fix the problem. But is there a way to run multiple samples at a time on windows? Because I have over 50 images to process.
On Sat, Jan 13, 2024, 12:31 AM Douglas N. Greve dgreve@mgh.harvard.edu wrote:
That is the bbregister command. You should look at the output of recon-all
On 1/11/2024 5:37 PM, ERNEST KISSI wrote:
External Email - Use CautionThis what the output shows doing the bbregister.
[image: image.png]
On Thu, Jan 11, 2024 at 6:09 PM Fischl, Bruce R.,PHD < BFISCHL@mgh.harvard.edu> wrote:
A T1-weighted FLASH should work. When you say “it did not work” what do you mean? Can you give us some details?
Cheers
Bruce
*From:* freesurfer-bounces@nmr.mgh.harvard.edu < freesurfer-bounces@nmr.mgh.harvard.edu> *On Behalf Of *ERNEST KISSI *Sent:* Thursday, January 11, 2024 3:54 AM *To:* freesurfer@nmr.mgh.harvard.edu *Subject:* [Freesurfer] Registration of MPF to FLASH 3D image
External Email - Use Caution *Dear Freesurfer team,
I messaged the team on my MPF map analysis and a suggestion was made that I register the MPF maps on the T1 MPRAGE images. However, I did not acquire MPRAGE but FLASH images.
Can I used those instead ? Again, I tried even using only the T1 FLASH images and it did not work so I am not sure whether the registration of the MPF maps on it will work or not. Is there anyway around this?
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