External Email - Use Caution
Dear Freesurfer team,
I messaged the team on my MPF map analysis and a suggestion was made that I register the MPF maps on the T1 MPRAGE images. However, I did not acquire MPRAGE but FLASH images. Can I used those instead ? Again, I tried even using only the T1 FLASH images and it did not work so I am not sure whether the registration of the MPF maps on it will work or not. Is there anyway around this?
Thank you.
A T1-weighted FLASH should work. When you say “it did not work” what do you mean? Can you give us some details?
Cheers Bruce
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of ERNEST KISSI Sent: Thursday, January 11, 2024 3:54 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Registration of MPF to FLASH 3D image
External Email - Use Caution Dear Freesurfer team,
I messaged the team on my MPF map analysis and a suggestion was made that I register the MPF maps on the T1 MPRAGE images. However, I did not acquire MPRAGE but FLASH images. Can I used those instead ? Again, I tried even using only the T1 FLASH images and it did not work so I am not sure whether the registration of the MPF maps on it will work or not. Is there anyway around this?
Thank you.
External Email - Use Caution
This what the output shows doing the bbregister.
[image: image.png]
On Thu, Jan 11, 2024 at 6:09 PM Fischl, Bruce R.,PHD < BFISCHL@mgh.harvard.edu> wrote:
A T1-weighted FLASH should work. When you say “it did not work” what do you mean? Can you give us some details?
Cheers
Bruce
*From:* freesurfer-bounces@nmr.mgh.harvard.edu < freesurfer-bounces@nmr.mgh.harvard.edu> *On Behalf Of *ERNEST KISSI *Sent:* Thursday, January 11, 2024 3:54 AM *To:* freesurfer@nmr.mgh.harvard.edu *Subject:* [Freesurfer] Registration of MPF to FLASH 3D image
External Email - Use Caution *Dear Freesurfer team,
I messaged the team on my MPF map analysis and a suggestion was made that I register the MPF maps on the T1 MPRAGE images. However, I did not acquire MPRAGE but FLASH images.
Can I used those instead ? Again, I tried even using only the T1 FLASH images and it did not work so I am not sure whether the registration of the MPF maps on it will work or not. Is there anyway around this?
Thank you. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1jckhvpTrSA73ODmCVtEoybTAhNZdfCcRmPbeHhB_NHGE-E... The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://secure-web.cisco.com/1Er0iWRe92JGe_3oag-k7nmq0IPOBOvUrliMXwrWgcwooww... < https://secure-web.cisco.com/1Er0iWRe92JGe_3oag-k7nmq0IPOBOvUrliMXwrWgcwooww... .
That is the bbregister command. You should look at the output of recon-all
On 1/11/2024 5:37 PM, ERNEST KISSI wrote:
External Email - Use Caution
This what the output shows doing the bbregister.
image.png
On Thu, Jan 11, 2024 at 6:09 PM Fischl, Bruce R.,PHD BFISCHL@mgh.harvard.edu wrote:
A T1-weighted FLASH should work. When you say “it did not work” what do you mean? Can you give us some details? Cheers Bruce *From:*freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> *On Behalf Of *ERNEST KISSI *Sent:* Thursday, January 11, 2024 3:54 AM *To:* freesurfer@nmr.mgh.harvard.edu *Subject:* [Freesurfer] Registration of MPF to FLASH 3D image * External Email - Use Caution * Dear Freesurfer team, I messaged the team on my MPF map analysis and a suggestion was made that I register the MPF maps on the T1 MPRAGE images. However, I did not acquire MPRAGE but FLASH images. Can I used those instead ? Again, I tried even using only the T1 FLASH images and it did not work so I am not sure whether the registration of the MPF maps on it will work or not. Is there anyway around this? Thank you. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer <https://secure-web.cisco.com/1jckhvpTrSA73ODmCVtEoybTAhNZdfCcRmPbeHhB_NHGE-EQGO6D8yCM9KNJ72_VNnpyXAzlLxslZq01nhND42LequdcbueYPdCgxnlIG5lcyeaawoft4N1DEm_6emSmT_EOs5j7SvD6SvZb2JHT5jR4MQWyQ7n7S9bJEAzlP30Iw8Zi-3yZEa85iRw2Lhc7BofSJQM2yEtfNBFwyZaPxIx0Assbl1Cy02Vw8h_JJz6HUlSltqNK926AOqLsPUMNqTbRPAgV5eRhy4TOc8gVAV89e9zmkrY2CSuZTj62CmNJCtyDA5drAa8oObOV9acmK/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer> The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://www.massgeneralbrigham.org/complianceline <https://secure-web.cisco.com/1Er0iWRe92JGe_3oag-k7nmq0IPOBOvUrliMXwrWgcwooww5SY5oOXfyTEnsaKo6uNBxUwttJZR53znD32i86dv8HhXFxlR_ojSSYup1X5uWi7SH4mEBeGLE-GUWEZ-KMSwrctFCua5bqjEaH2uY-U-GR-3oudL56golx2WaFqDcswS53uULiNmEgHgl3EdqRKhJ5lLOBrF1Qz9oMkhjWdP5rFEj_c8H4Icy2Cj8ShMG7nhM4q9GCofvJED20klw2Qd_TR893Sgl_xRI3z9bo0B7uwihT7pd5C9fyUBWVD7gcNJclHEPf7YKeDTb7JSOc/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> <*MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://www.massgeneralbrigham.org/complianceline <https://secure-web.cisco.com/1Er0iWRe92JGe_3oag-k7nmq0IPOBOvUrliMXwrWgcwooww5SY5oOXfyTEnsaKo6uNBxUwttJZR53znD32i86dv8HhXFxlR_ojSSYup1X5uWi7SH4mEBeGLE-GUWEZ-KMSwrctFCua5bqjEaH2uY-U-GR-3oudL56golx2WaFqDcswS53uULiNmEgHgl3EdqRKhJ5lLOBrF1Qz9oMkhjWdP5rFEj_c8H4Icy2Cj8ShMG7nhM4q9GCofvJED20klw2Qd_TR893Sgl_xRI3z9bo0B7uwihT7pd5C9fyUBWVD7gcNJclHEPf7YKeDTb7JSOc/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline>> .
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
Thanks,I have been able to fix the problem. But is there a way to run multiple samples at a time on windows? Because I have over 50 images to process.
On Sat, Jan 13, 2024, 12:31 AM Douglas N. Greve dgreve@mgh.harvard.edu wrote:
That is the bbregister command. You should look at the output of recon-all
On 1/11/2024 5:37 PM, ERNEST KISSI wrote:
External Email - Use CautionThis what the output shows doing the bbregister.
[image: image.png]
On Thu, Jan 11, 2024 at 6:09 PM Fischl, Bruce R.,PHD < BFISCHL@mgh.harvard.edu> wrote:
A T1-weighted FLASH should work. When you say “it did not work” what do you mean? Can you give us some details?
Cheers
Bruce
*From:* freesurfer-bounces@nmr.mgh.harvard.edu < freesurfer-bounces@nmr.mgh.harvard.edu> *On Behalf Of *ERNEST KISSI *Sent:* Thursday, January 11, 2024 3:54 AM *To:* freesurfer@nmr.mgh.harvard.edu *Subject:* [Freesurfer] Registration of MPF to FLASH 3D image
External Email - Use Caution *Dear Freesurfer team,
I messaged the team on my MPF map analysis and a suggestion was made that I register the MPF maps on the T1 MPRAGE images. However, I did not acquire MPRAGE but FLASH images.
Can I used those instead ? Again, I tried even using only the T1 FLASH images and it did not work so I am not sure whether the registration of the MPF maps on it will work or not. Is there anyway around this?
Thank you. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1zTrE3LbyM-s8DytG8EKabySVjAS8tgnDzx6K5lpLFxQzgm... https://secure-web.cisco.com/1jckhvpTrSA73ODmCVtEoybTAhNZdfCcRmPbeHhB_NHGE-EQGO6D8yCM9KNJ72_VNnpyXAzlLxslZq01nhND42LequdcbueYPdCgxnlIG5lcyeaawoft4N1DEm_6emSmT_EOs5j7SvD6SvZb2JHT5jR4MQWyQ7n7S9bJEAzlP30Iw8Zi-3yZEa85iRw2Lhc7BofSJQM2yEtfNBFwyZaPxIx0Assbl1Cy02Vw8h_JJz6HUlSltqNK926AOqLsPUMNqTbRPAgV5eRhy4TOc8gVAV89e9zmkrY2CSuZTj62CmNJCtyDA5drAa8oObOV9acmK/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1I667QcMFy_OBc_hulxN6sUX7aK7PGmSj-RZ8kSHvja4pvV... https://secure-web.cisco.com/1Er0iWRe92JGe_3oag-k7nmq0IPOBOvUrliMXwrWgcwooww5SY5oOXfyTEnsaKo6uNBxUwttJZR53znD32i86dv8HhXFxlR_ojSSYup1X5uWi7SH4mEBeGLE-GUWEZ-KMSwrctFCua5bqjEaH2uY-U-GR-3oudL56golx2WaFqDcswS53uULiNmEgHgl3EdqRKhJ5lLOBrF1Qz9oMkhjWdP5rFEj_c8H4Icy2Cj8ShMG7nhM4q9GCofvJED20klw2Qd_TR893Sgl_xRI3z9bo0B7uwihT7pd5C9fyUBWVD7gcNJclHEPf7YKeDTb7JSOc/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline <*MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1I667QcMFy_OBc_hulxN6sUX7aK7PGmSj-RZ8kSHvja4pvV... https://secure-web.cisco.com/1Er0iWRe92JGe_3oag-k7nmq0IPOBOvUrliMXwrWgcwooww5SY5oOXfyTEnsaKo6uNBxUwttJZR53znD32i86dv8HhXFxlR_ojSSYup1X5uWi7SH4mEBeGLE-GUWEZ-KMSwrctFCua5bqjEaH2uY-U-GR-3oudL56golx2WaFqDcswS53uULiNmEgHgl3EdqRKhJ5lLOBrF1Qz9oMkhjWdP5rFEj_c8H4Icy2Cj8ShMG7nhM4q9GCofvJED20klw2Qd_TR893Sgl_xRI3z9bo0B7uwihT7pd5C9fyUBWVD7gcNJclHEPf7YKeDTb7JSOc/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> .
Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1zTrE3LbyM-s8DytG8EKabySVjAS8tgnDzx6K5lpLFxQzgm... The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://secure-web.cisco.com/1I667QcMFy_OBc_hulxN6sUX7aK7PGmSj-RZ8kSHvja4pvV... < https://secure-web.cisco.com/1I667QcMFy_OBc_hulxN6sUX7aK7PGmSj-RZ8kSHvja4pvV... .
If you can program, then write a script with a loop
On 1/12/2024 5:41 PM, ERNEST KISSI wrote:
External Email - Use Caution
Thanks,I have been able to fix the problem. But is there a way to run multiple samples at a time on windows? Because I have over 50 images to process.
On Sat, Jan 13, 2024, 12:31 AM Douglas N. Greve dgreve@mgh.harvard.edu wrote:
That is the bbregister command. You should look at the output of recon-all On 1/11/2024 5:37 PM, ERNEST KISSI wrote:External Email - Use Caution This what the output shows doing the bbregister. image.png On Thu, Jan 11, 2024 at 6:09 PM Fischl, Bruce R.,PHD <BFISCHL@mgh.harvard.edu> wrote: A T1-weighted FLASH should work. When you say “it did not work” what do you mean? Can you give us some details? Cheers Bruce *From:*freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> *On Behalf Of *ERNEST KISSI *Sent:* Thursday, January 11, 2024 3:54 AM *To:* freesurfer@nmr.mgh.harvard.edu *Subject:* [Freesurfer] Registration of MPF to FLASH 3D image * External Email - Use Caution * Dear Freesurfer team, I messaged the team on my MPF map analysis and a suggestion was made that I register the MPF maps on the T1 MPRAGE images. However, I did not acquire MPRAGE but FLASH images. Can I used those instead ? Again, I tried even using only the T1 FLASH images and it did not work so I am not sure whether the registration of the MPF maps on it will work or not. Is there anyway around this? Thank you. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer <https://secure-web.cisco.com/1jckhvpTrSA73ODmCVtEoybTAhNZdfCcRmPbeHhB_NHGE-EQGO6D8yCM9KNJ72_VNnpyXAzlLxslZq01nhND42LequdcbueYPdCgxnlIG5lcyeaawoft4N1DEm_6emSmT_EOs5j7SvD6SvZb2JHT5jR4MQWyQ7n7S9bJEAzlP30Iw8Zi-3yZEa85iRw2Lhc7BofSJQM2yEtfNBFwyZaPxIx0Assbl1Cy02Vw8h_JJz6HUlSltqNK926AOqLsPUMNqTbRPAgV5eRhy4TOc8gVAV89e9zmkrY2CSuZTj62CmNJCtyDA5drAa8oObOV9acmK/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer> The information in this e-mail is intended only for the person to whom it is addressed. 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Douglas N. Greve -
ERNEST KISSI -
Fischl, Bruce R.,PHD