Re: [Freesurfer] lgi for longitudinal scans

Hi Anna,

no, you would still do:

recon-all -long tpid baseid -localGI

just not use the '-all'.

Best, Martin

On 03/26/2014 11:12 AM, Anna Jonsson wrote:

thank you. But if the lnog process has already been done and these induviduals already have long directories so to speak, I would just put the lgi flag on as normal but just replace the subject name with the long subject name eg ? recon-all -s XXXX_long -localGI

Thank you

On Sat, Mar 15, 2014 at 2:07 PM, Martin Reuter <mreuter@nmr.mgh.harvard.edu mailto:mreuter@nmr.mgh.harvard.edu> wrote:

Hi Anna,

for the image processing, you just add the lgi flag to the regular
longitudinal recon-all command
recon-all -long ......     -lgi

for the analysis after that you use the long directories.

Best, Martin

On Mar 15, 2014, at 10:04 AM, Anna Jonsson <ajonsson09@gmail.com
<mailto:ajonsson09@gmail.com>> wrote:

...

Dear group,

If I want conduct gyrification analyses on the long runs that
have been through the longitudinal stream, do I just perform the
"normal" baseline command on the .long data?

thank you,

kind wishes

Anna
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---------------------------------
Dr. Martin Reuter
Assistant in Neuroscience - Massachusetts General Hospital
Instructor in Neurology   - Harvard Medical School
MGH / HMS / MIT

A.A.Martinos Center for Biomedical Imaging
149 Thirteenth Street, Suite 2301
Charlestown, MA 02129

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Email:
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reuter@mit.edu <mailto:reuter@mit.edu>
Web  : http://reuter.mit.edu <http://reuter.mit.edu/>


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