I'll bear that in mind next time!
Thank you!! Andreia
Quoting Anastasia Yendiki ayendiki@nmr.mgh.harvard.edu:
No problem, you can usually find the answers to most of these types of questions in the help text of the commands. For example if you run "mris_label2annot --help" you'll see:
[...]
--a annotname
Name of the annotation to create. The actual file will be called hemi.annotname.annot, and it will be created in subject/label. If this file exists, then mris_label2annot exits immediately with an error message. It is then up to the user to manually delete this file (this is so annotations are not accidentally deleted, which could be a huge inconvenience).
[...]
On Tue, 26 Mar 2013, _andreia_@sapo.pt wrote:
Oh so that was it... I've cd to the dir where the annot file is and now everything worked just fine... I checked the values in the stats file and they are smaller now.
So I must do that when running the label2label so the files are created in the label dir and not in Freesurfer dir...
By the way, why did the command label2annot created the file in the right dir?
As you're noticing I'm not very familiar with Unix and while using> Freesurfer I never had to use the cd command to work...
Thank you very much Anastasia!
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.