17 May
2020
17 May
'20
11:57 a.m.
oh, then check out the bbregister help and see if you can get it working On Sun, 17 May 2020, Amar Shukla wrote:
External Email - Use Caution
yes
On Sun, May 17, 2020 at 8:54 PM Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: sorry, I'm not sure I understand. bbregister will let you register a T2 to the T1 of the same subject, is that what you want?
cheers Bruce On Sun, 17 May 2020, Amar Shukla wrote: > > External Email - Use Caution > > Dear Sir, > thank you, Sir, for your valuable advice, > > Can I register all the t2 types file with a Structural template, > cross-registration we can do or not? > > > > On Mon, May 11, 2020 at 11:04 PM Douglas N. Greve <dgreve@mgh.harvard.edu> > wrote: > It is probably more up-to-date to run > bbregister --help > > On 5/9/2020 1:10 PM, Bruce Fischl wrote: > https://surfer.nmr.mgh.harvard.edu/fswiki/bbregister > On Sat, 9 May 2020, Amar Shukla wrote: > > > External Email - Use Caution > > Dear Sir, > Thank you for valuable information, do we have > any link or resource to get > through this tool. > > regards > Amar Shukla > > On Sat, May 9, 2020 at 10:31 PM Bruce Fischl > <fischl@nmr.mgh.harvard.edu> > wrote: > Hi Amar > > no restriction - all of those should be > registerable using > Doug's > excellent bbregister tool > > cheers > Bruce > On Sat, 9 May 2020, Amar Shukla wrote: > > > > > External Email - Use > Caution > > > > Dear SirDo we have restriction in the > registration with a > different format > > of data like DTI, sMRI, PET and many > more or we can go for > registration in > > any combination in FREE Surfer. > > > > regards > > Amar Shukla > > > > On Mon, Apr 13, 2020 at 8:14 PM Amar > Shukla > <amar28071989@gmail.com> wrote: > > Thank you so much sir > > > > On Mon, 13 Apr 2020, 19:56 Bruce > Fischl, > <fischl@nmr.mgh.harvard.edu> > > wrote: > > yes, that should be doable if > you process in the order I > > suggested below > > cheers > > Bruce > > On > > Mon, 13 Apr 2020, Amar Shukla > wrote: > > > > > > > > External Email - Use > Caution > > > > > > Dear Sir, > > > > > > Thank you for your precious > reply > > > > > > Actually i am working on to > the study of Disease which > > have the effect on > > > the brain. > > > > > > 1) First i am using t1 image > for analysis of the same > > subject of that > > > disease. > > > > > > 2) I am using Diffussion image > for the analysis for > the > > same subject. > > > > > > So can i make any relation > between trac based analysis > > of diffusion image > > > and Volumetric analysis of T1 > weighted image of same > > subject. > > > > > > regards > > > Amar Shukla > > > > > > > > > On Mon, 13 Apr 2020, 19:09 > Bruce Fischl, > > <fischl@nmr.mgh.harvard.edu> > wrote: > > > Hi Amar > > > > > > I'm not quite sure I > understand your question, > but > > in FS you > > > would use > > > the T1 as input to > recon-all, then the outputs > of > > that and the > > > diffusion > > > data would let you run > tracula > > > > > > cheers > > > Bruce > > > On Mon, 13 Apr 2020, > Amar Shukla wrote: > > > > > > > > > > > External Email > - Use Caution > > > > > > > > Hello Freesurfer, > > > > > > > > Can we go through the > volumetric [surface > area > > and many more > > > ] through DTI > > > > images and T1 or t2 > weighted images of the > same > > subject. Can > > > we provide > > > > common study and can > we develop any analysis > on > > these studies. > > > > My research is focused > on these direction o or > > any kind of > > > corelation > > > > through different > Images . > > > > basis of diffusion > images and T1 or t2 > weighted > > images, > > > > > > > > so please give > suggestions and comment on > these. > > > > > > > > > > > > > > > > -- > > > > With Regards, > > > > Amar Shukla > > > > > > > > > > > > >_______________________________________________ > > > Freesurfer mailing list > > > > Freesurfer@nmr.mgh.harvard.edu > > > > > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > > > >_______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > > -- > > With Regards, > > Amar Shukla > > Assistant Professor, > > M tech AI ANN(2014-2016), > > Centre Of Information Technology, > > UPES > > Contact :+91 897 977 8016 > > > > >_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > -- > With Regards, > Amar Shukla > Assistant Professor, > M tech AI ANN(2014-2016), > Centre Of Information Technology, > UPES > Contact :+91 897 977 8016 > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > -- > With Regards, > Amar Shukla > Assistant Professor, > M tech AI ANN(2014-2016), > Centre Of Information Technology, > UPES > Contact :+91 897 977 8016 > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer-- With Regards, Amar Shukla Assistant Professor, M tech AI ANN(2014-2016), Centre Of Information Technology, UPES Contact :+91 897 977 8016