External Email - Use Caution
Hello Freesurfer,
Can we go through the volumetric [surface area and many more ] through DTI images and T1 or t2 weighted images of the same subject. Can we provide common study and can we develop any analysis on these studies. My research is focused on these direction o or any kind of corelation through different Images . basis of diffusion images and T1 or t2 weighted images,
so please give suggestions and comment on these.
Hi Amar
I'm not quite sure I understand your question, but in FS you would use the T1 as input to recon-all, then the outputs of that and the diffusion data would let you run tracula
cheers Bruce On Mon, 13 Apr 2020, Amar Shukla wrote:
External Email - Use Caution
Hello Freesurfer,
Can we go through the volumetric [surface area and many more ] through DTI images and T1 or t2 weighted images of the same subject. Can we provide common study and can we develop any analysis on these studies. My research is focused on these direction o or any kind of corelation through different Images . basis of diffusion images and T1 or t2 weighted images,
so please give suggestions and comment on these.
-- With Regards, Amar Shukla
External Email - Use Caution
Dear Sir,
Thank you for your precious reply
Actually i am working on to the study of Disease which have the effect on the brain.
1) First i am using t1 image for analysis of the same subject of that disease.
2) I am using Diffussion image for the analysis for the same subject.
So can i make any relation between trac based analysis of diffusion image and Volumetric analysis of T1 weighted image of same subject.
regards Amar Shukla
On Mon, 13 Apr 2020, 19:09 Bruce Fischl, fischl@nmr.mgh.harvard.edu wrote:
Hi Amar
I'm not quite sure I understand your question, but in FS you would use the T1 as input to recon-all, then the outputs of that and the diffusion data would let you run tracula
cheers Bruce On Mon, 13 Apr 2020, Amar Shukla wrote:
External Email - Use CautionHello Freesurfer,
Can we go through the volumetric [surface area and many more ] through
DTI
images and T1 or t2 weighted images of the same subject. Can we provide common study and can we develop any analysis on these studies. My research is focused on these direction o or any kind of corelation through different Images . basis of diffusion images and T1 or t2 weighted images,
so please give suggestions and comment on these.
-- With Regards, Amar Shukla
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
yes, that should be doable if you process in the order I suggested below cheers Bruce On Mon, 13 Apr 2020, Amar Shukla wrote:
External Email - Use Caution
Dear Sir,
Thank you for your precious reply
Actually i am working on to the study of Disease which have the effect on the brain.
- First i am using t1 image for analysis of the same subject of that
disease.
- I am using Diffussion image for the analysis for the same subject.
So can i make any relation between trac based analysis of diffusion image and Volumetric analysis of T1 weighted image of same subject.
regards Amar Shukla
On Mon, 13 Apr 2020, 19:09 Bruce Fischl, fischl@nmr.mgh.harvard.edu wrote: Hi Amar
I'm not quite sure I understand your question, but in FS you would use the T1 as input to recon-all, then the outputs of that and the diffusion data would let you run tracula cheers Bruce On Mon, 13 Apr 2020, Amar Shukla wrote: > > External Email - Use Caution > > Hello Freesurfer, > > Can we go through the volumetric [surface area and many more ] through DTI > images and T1 or t2 weighted images of the same subject. Can we provide > common study and can we develop any analysis on these studies. > My research is focused on these direction o or any kind of corelation > through different Images . > basis of diffusion images and T1 or t2 weighted images, > > so please give suggestions and comment on these. > > > > -- > With Regards, > Amar Shukla > > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
Thank you so much sir
On Mon, 13 Apr 2020, 19:56 Bruce Fischl, fischl@nmr.mgh.harvard.edu wrote:
yes, that should be doable if you process in the order I suggested below cheers Bruce On Mon, 13 Apr 2020, Amar Shukla wrote:
External Email - Use CautionDear Sir,
Thank you for your precious reply
Actually i am working on to the study of Disease which have the effect on the brain.
- First i am using t1 image for analysis of the same subject of that
disease.
- I am using Diffussion image for the analysis for the same subject.
So can i make any relation between trac based analysis of diffusion image and Volumetric analysis of T1 weighted image of same subject.
regards Amar Shukla
On Mon, 13 Apr 2020, 19:09 Bruce Fischl, fischl@nmr.mgh.harvard.edu
wrote:
Hi Amar I'm not quite sure I understand your question, but in FS you would use the T1 as input to recon-all, then the outputs of that and the diffusion data would let you run tracula cheers Bruce On Mon, 13 Apr 2020, Amar Shukla wrote: > > External Email - Use Caution > > Hello Freesurfer, > > Can we go through the volumetric [surface area and many more ] through DTI > images and T1 or t2 weighted images of the same subject. Can we provide > common study and can we develop any analysis on these studies. > My research is focused on these direction o or any kind of corelation > through different Images . > basis of diffusion images and T1 or t2 weighted images, > > so please give suggestions and comment on these. > > > > -- > With Regards, > Amar Shukla > > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
Dear Sir Do we have restriction in the registration with a different format of data like DTI, sMRI, PET and many more or we can go for registration in any combination in FREE Surfer.
regards Amar Shukla
On Mon, Apr 13, 2020 at 8:14 PM Amar Shukla amar28071989@gmail.com wrote:
Thank you so much sir
On Mon, 13 Apr 2020, 19:56 Bruce Fischl, fischl@nmr.mgh.harvard.edu wrote:
yes, that should be doable if you process in the order I suggested below cheers Bruce On Mon, 13 Apr 2020, Amar Shukla wrote:
External Email - Use CautionDear Sir,
Thank you for your precious reply
Actually i am working on to the study of Disease which have the effect
on
the brain.
- First i am using t1 image for analysis of the same subject of that
disease.
- I am using Diffussion image for the analysis for the same subject.
So can i make any relation between trac based analysis of diffusion
image
and Volumetric analysis of T1 weighted image of same subject.
regards Amar Shukla
On Mon, 13 Apr 2020, 19:09 Bruce Fischl, fischl@nmr.mgh.harvard.edu
wrote:
Hi Amar I'm not quite sure I understand your question, but in FS you would use the T1 as input to recon-all, then the outputs of that and the diffusion data would let you run tracula cheers Bruce On Mon, 13 Apr 2020, Amar Shukla wrote: > > External Email - Use Caution > > Hello Freesurfer, > > Can we go through the volumetric [surface area and many more ] through DTI > images and T1 or t2 weighted images of the same subject. Can we provide > common study and can we develop any analysis on these studies. > My research is focused on these direction o or any kind of corelation > through different Images . > basis of diffusion images and T1 or t2 weighted images, > > so please give suggestions and comment on these. > > > > -- > With Regards, > Amar Shukla > > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Amar
no restriction - all of those should be registerable using Doug's excellent bbregister tool
cheers Bruce On Sat, 9 May 2020, Amar Shukla wrote:
External Email - Use Caution
Dear SirDo we have restriction in the registration with a different format of data like DTI, sMRI, PET and many more or we can go for registration in any combination in FREE Surfer.
regards Amar Shukla
On Mon, Apr 13, 2020 at 8:14 PM Amar Shukla amar28071989@gmail.com wrote: Thank you so much sir
On Mon, 13 Apr 2020, 19:56 Bruce Fischl, fischl@nmr.mgh.harvard.edu wrote: yes, that should be doable if you process in the order I suggested below cheers Bruce On Mon, 13 Apr 2020, Amar Shukla wrote:
> > External Email - Use Caution > > Dear Sir, > > Thank you for your precious reply > > Actually i am working on to the study of Disease which have the effect on > the brain. > > 1) First i am using t1 image for analysis of the same subject of that > disease. > > 2) I am using Diffussion image for the analysis for the same subject. > > So can i make any relation between trac based analysis of diffusion image > and Volumetric analysis of T1 weighted image of same subject. > > regards > Amar Shukla > > > On Mon, 13 Apr 2020, 19:09 Bruce Fischl, <fischl@nmr.mgh.harvard.edu> wrote: > Hi Amar > > I'm not quite sure I understand your question, but in FS you > would use > the T1 as input to recon-all, then the outputs of that and the > diffusion > data would let you run tracula > > cheers > Bruce > On Mon, 13 Apr 2020, Amar Shukla wrote: > > > > > External Email - Use Caution > > > > Hello Freesurfer, > > > > Can we go through the volumetric [surface area and many more > ] through DTI > > images and T1 or t2 weighted images of the same subject. Can > we provide > > common study and can we develop any analysis on these studies. > > My research is focused on these direction o or any kind of > corelation > > through different Images . > > basis of diffusion images and T1 or t2 weighted images, > > > > so please give suggestions and comment on these. > > > > > > > > -- > > With Regards, > > Amar Shukla > > > > > >_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer-- With Regards, Amar Shukla Assistant Professor, M tech AI ANN(2014-2016), Centre Of Information Technology, UPES Contact :+91 897 977 8016
External Email - Use Caution
Dear Sir,
Thank you for valuable information, do we have any link or resource to get through this tool.
regards Amar Shukla
On Sat, May 9, 2020 at 10:31 PM Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Amar
no restriction - all of those should be registerable using Doug's excellent bbregister tool
cheers Bruce On Sat, 9 May 2020, Amar Shukla wrote:
External Email - Use CautionDear SirDo we have restriction in the registration with a different
format
of data like DTI, sMRI, PET and many more or we can go for
registration in
any combination in FREE Surfer.
regards Amar Shukla
On Mon, Apr 13, 2020 at 8:14 PM Amar Shukla amar28071989@gmail.com
wrote:
Thank you so much sirOn Mon, 13 Apr 2020, 19:56 Bruce Fischl, fischl@nmr.mgh.harvard.edu wrote: yes, that should be doable if you process in the order I suggested below cheers Bruce On Mon, 13 Apr 2020, Amar Shukla wrote:
> > External Email - Use Caution > > Dear Sir, > > Thank you for your precious reply > > Actually i am working on to the study of Disease which have the effect on > the brain. > > 1) First i am using t1 image for analysis of the same subject of that > disease. > > 2) I am using Diffussion image for the analysis for the same subject. > > So can i make any relation between trac based analysis of diffusion image > and Volumetric analysis of T1 weighted image of same subject. > > regards > Amar Shukla > > > On Mon, 13 Apr 2020, 19:09 Bruce Fischl, <fischl@nmr.mgh.harvard.edu> wrote: > Hi Amar > > I'm not quite sure I understand your question, but in FS you > would use > the T1 as input to recon-all, then the outputs of that and the > diffusion > data would let you run tracula > > cheers > Bruce > On Mon, 13 Apr 2020, Amar Shukla wrote: > > > > > External Email - Use Caution > > > > Hello Freesurfer, > > > > Can we go through the volumetric [surface area and many more > ] through DTI > > images and T1 or t2 weighted images of the same subject. Can > we provide > > common study and can we develop any analysis on these studies. > > My research is focused on these direction o or any kind of > corelation > > through different Images . > > basis of diffusion images and T1 or t2 weighted images, > > > > so please give suggestions and comment on these. > > > > > > > > -- > > With Regards, > > Amar Shukla > > > > > >_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer-- With Regards, Amar Shukla Assistant Professor, M tech AI ANN(2014-2016), Centre Of Information Technology, UPES Contact :+91 897 977 8016
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
https://surfer.nmr.mgh.harvard.edu/fswiki/bbregister On Sat, 9 May 2020, Amar Shukla wrote:
External Email - Use Caution
Dear Sir, Thank you for valuable information, do we have any link or resource to get through this tool.
regards Amar Shukla
On Sat, May 9, 2020 at 10:31 PM Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: Hi Amar
no restriction - all of those should be registerable using Doug's excellent bbregister tool cheers Bruce On Sat, 9 May 2020, Amar Shukla wrote: > > External Email - Use Caution > > Dear SirDo we have restriction in the registration with a different format > of data like DTI, sMRI, PET and many more or we can go for registration in > any combination in FREE Surfer. > > regards > Amar Shukla > > On Mon, Apr 13, 2020 at 8:14 PM Amar Shukla <amar28071989@gmail.com> wrote: > Thank you so much sir > > On Mon, 13 Apr 2020, 19:56 Bruce Fischl, <fischl@nmr.mgh.harvard.edu> > wrote: > yes, that should be doable if you process in the order I > suggested below > cheers > Bruce > On > Mon, 13 Apr 2020, Amar Shukla wrote: > > > > > External Email - Use Caution > > > > Dear Sir, > > > > Thank you for your precious reply > > > > Actually i am working on to the study of Disease which > have the effect on > > the brain. > > > > 1) First i am using t1 image for analysis of the same > subject of that > > disease. > > > > 2) I am using Diffussion image for the analysis for the > same subject. > > > > So can i make any relation between trac based analysis > of diffusion image > > and Volumetric analysis of T1 weighted image of same > subject. > > > > regards > > Amar Shukla > > > > > > On Mon, 13 Apr 2020, 19:09 Bruce Fischl, > <fischl@nmr.mgh.harvard.edu> wrote: > > Hi Amar > > > > I'm not quite sure I understand your question, but > in FS you > > would use > > the T1 as input to recon-all, then the outputs of > that and the > > diffusion > > data would let you run tracula > > > > cheers > > Bruce > > On Mon, 13 Apr 2020, Amar Shukla wrote: > > > > > > > > External Email - Use Caution > > > > > > Hello Freesurfer, > > > > > > Can we go through the volumetric [surface area > and many more > > ] through DTI > > > images and T1 or t2 weighted images of the same > subject. Can > > we provide > > > common study and can we develop any analysis on > these studies. > > > My research is focused on these direction o or > any kind of > > corelation > > > through different Images . > > > basis of diffusion images and T1 or t2 weighted > images, > > > > > > so please give suggestions and comment on these. > > > > > > > > > > > > -- > > > With Regards, > > > Amar Shukla > > > > > > > > >_______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > >_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > -- > With Regards, > Amar Shukla > Assistant Professor, > M tech AI ANN(2014-2016), > Centre Of Information Technology, > UPES > Contact :+91 897 977 8016 > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer-- With Regards, Amar Shukla Assistant Professor, M tech AI ANN(2014-2016), Centre Of Information Technology, UPES Contact :+91 897 977 8016
It is probably more up-to-date to run bbregister --help
On 5/9/2020 1:10 PM, Bruce Fischl wrote:
https://surfer.nmr.mgh.harvard.edu/fswiki/bbregister On Sat, 9 May 2020, Amar Shukla wrote:
External Email - Use Caution
Dear Sir, Thank you for valuable information, do we have any link or resource to get through this tool.
regards Amar Shukla
On Sat, May 9, 2020 at 10:31 PM Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: Hi Amar
no restriction - all of those should be registerable using Doug's excellent bbregister tool
cheers Bruce On Sat, 9 May 2020, Amar Shukla wrote:
> > External Email - Use Caution > > Dear SirDo we have restriction in the registration with a different format > of data like DTI, sMRI, PET and many more or we can go for registration in > any combination in FREE Surfer. > > regards > Amar Shukla > > On Mon, Apr 13, 2020 at 8:14 PM Amar Shukla amar28071989@gmail.com wrote: > Thank you so much sir > > On Mon, 13 Apr 2020, 19:56 Bruce Fischl, fischl@nmr.mgh.harvard.edu > wrote: > yes, that should be doable if you process in the order I > suggested below > cheers > Bruce > On > Mon, 13 Apr 2020, Amar Shukla wrote: > > > > > External Email - Use Caution > > > > Dear Sir, > > > > Thank you for your precious reply > > > > Actually i am working on to the study of Disease which > have the effect on > > the brain. > > > > 1) First i am using t1 image for analysis of the same > subject of that > > disease. > > > > 2) I am using Diffussion image for the analysis for the > same subject. > > > > So can i make any relation between trac based analysis > of diffusion image > > and Volumetric analysis of T1 weighted image of same > subject. > > > > regards > > Amar Shukla > > > > > > On Mon, 13 Apr 2020, 19:09 Bruce Fischl, > fischl@nmr.mgh.harvard.edu wrote: > > Hi Amar > > > > I'm not quite sure I understand your question, but > in FS you > > would use > > the T1 as input to recon-all, then the outputs of > that and the > > diffusion > > data would let you run tracula > > > > cheers > > Bruce > > On Mon, 13 Apr 2020, Amar Shukla wrote: > > > > > > > > External Email - Use Caution > > > > > > Hello Freesurfer, > > > > > > Can we go through the volumetric [surface area > and many more > > ] through DTI > > > images and T1 or t2 weighted images of the same > subject. Can > > we provide > > > common study and can we develop any analysis on > these studies. > > > My research is focused on these direction o or > any kind of > > corelation > > > through different Images . > > > basis of diffusion images and T1 or t2 weighted > images, > > > > > > so please give suggestions and comment on these. > > > > > > > > > > > > -- > > > With Regards, > > > Amar Shukla > > > > > > > > >_______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > >_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > -- > With Regards, > Amar Shukla > Assistant Professor, > M tech AI ANN(2014-2016), > Centre Of Information Technology, > UPES > Contact :+91 897 977 8016 > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- With Regards, Amar Shukla Assistant Professor, M tech AI ANN(2014-2016), Centre Of Information Technology, UPES Contact :+91 897 977 8016
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
Dear Sir,
thank you, Sir, for your valuable advice,
Can I register all the t2 types file with a Structural template, cross-registration we can do or not?
On Mon, May 11, 2020 at 11:04 PM Douglas N. Greve dgreve@mgh.harvard.edu wrote:
It is probably more up-to-date to run bbregister --help
On 5/9/2020 1:10 PM, Bruce Fischl wrote:
https://surfer.nmr.mgh.harvard.edu/fswiki/bbregister On Sat, 9 May 2020, Amar Shukla wrote:
External Email - Use CautionDear Sir, Thank you for valuable information, do we have any link or resource to get through this tool.
regards Amar Shukla
On Sat, May 9, 2020 at 10:31 PM Bruce Fischl fischl@nmr.mgh.harvard.edu fischl@nmr.mgh.harvard.edu wrote: Hi Amar
no restriction - all of those should be registerable using Doug's excellent bbregister tool cheers Bruce On Sat, 9 May 2020, Amar Shukla wrote: > > External Email - Use Caution > > Dear SirDo we have restriction in the registration with a different format > of data like DTI, sMRI, PET and many more or we can go for registration in > any combination in FREE Surfer. > > regards > Amar Shukla > > On Mon, Apr 13, 2020 at 8:14 PM Amar Shukla <amar28071989@gmail.com> <amar28071989@gmail.com> wrote: > Thank you so much sir > > On Mon, 13 Apr 2020, 19:56 Bruce Fischl, <fischl@nmr.mgh.harvard.edu> <fischl@nmr.mgh.harvard.edu> > wrote: > yes, that should be doable if you process in the order I > suggested below > cheers > Bruce > On > Mon, 13 Apr 2020, Amar Shukla wrote: > > > > > External Email - Use Caution > > > > Dear Sir, > > > > Thank you for your precious reply > > > > Actually i am working on to the study of Disease which > have the effect on > > the brain. > > > > 1) First i am using t1 image for analysis of the same > subject of that > > disease. > > > > 2) I am using Diffussion image for the analysis for the > same subject. > > > > So can i make any relation between trac based analysis > of diffusion image > > and Volumetric analysis of T1 weighted image of same > subject. > > > > regards > > Amar Shukla > > > > > > On Mon, 13 Apr 2020, 19:09 Bruce Fischl, > <fischl@nmr.mgh.harvard.edu> <fischl@nmr.mgh.harvard.edu>wrote: > > Hi Amar > > > > I'm not quite sure I understand your question, but > in FS you > > would use > > the T1 as input to recon-all, then the outputs of > that and the > > diffusion > > data would let you run tracula > > > > cheers > > Bruce > > On Mon, 13 Apr 2020, Amar Shukla wrote: > > > > > > > > External Email - Use Caution > > > > > > Hello Freesurfer, > > > > > > Can we go through the volumetric [surface area > and many more > > ] through DTI > > > images and T1 or t2 weighted images of the same > subject. Can > > we provide > > > common study and can we develop any analysis on > these studies. > > > My research is focused on these direction o or > any kind of > > corelation > > > through different Images . > > > basis of diffusion images and T1 or t2 weighted > images, > > > > > > so please give suggestions and comment on these. > > > > > > > > > > > > -- > > > With Regards, > > > Amar Shukla > > > > > > > > >_______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > >_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > -- > With Regards, > Amar Shukla > Assistant Professor, > M tech AI ANN(2014-2016), > Centre Of Information Technology, > UPES > Contact :+91 897 977 8016 > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- With Regards, Amar Shukla Assistant Professor, M tech AI ANN(2014-2016), Centre Of Information Technology, UPES Contact :+91 897 977 8016
Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
sorry, I'm not sure I understand. bbregister will let you register a T2 to the T1 of the same subject, is that what you want?
cheers Bruce On Sun, 17 May 2020, Amar Shukla wrote:
External Email - Use Caution
Dear Sir, thank you, Sir, for your valuable advice,
Can I register all the t2 types file with a Structural template, cross-registration we can do or not?
On Mon, May 11, 2020 at 11:04 PM Douglas N. Greve dgreve@mgh.harvard.edu wrote: It is probably more up-to-date to run bbregister --help
On 5/9/2020 1:10 PM, Bruce Fischl wrote: https://surfer.nmr.mgh.harvard.edu/fswiki/bbregister On Sat, 9 May 2020, Amar Shukla wrote: External Email - Use Caution Dear Sir, Thank you for valuable information, do we have any link or resource to get through this tool. regards Amar Shukla On Sat, May 9, 2020 at 10:31 PM Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote: Hi Amar no restriction - all of those should be registerable using Doug's excellent bbregister tool cheers Bruce On Sat, 9 May 2020, Amar Shukla wrote: > > External Email - Use Caution > > Dear SirDo we have restriction in the registration with a different format > of data like DTI, sMRI, PET and many more or we can go for registration in > any combination in FREE Surfer. > > regards > Amar Shukla > > On Mon, Apr 13, 2020 at 8:14 PM Amar Shukla <amar28071989@gmail.com> wrote: > Thank you so much sir > > On Mon, 13 Apr 2020, 19:56 Bruce Fischl, <fischl@nmr.mgh.harvard.edu> > wrote: > yes, that should be doable if you process in the order I > suggested below > cheers > Bruce > On > Mon, 13 Apr 2020, Amar Shukla wrote: > > > > > External Email - Use Caution > > > > Dear Sir, > > > > Thank you for your precious reply > > > > Actually i am working on to the study of Disease which > have the effect on > > the brain. > > > > 1) First i am using t1 image for analysis of the same > subject of that > > disease. > > > > 2) I am using Diffussion image for the analysis for the > same subject. > > > > So can i make any relation between trac based analysis > of diffusion image > > and Volumetric analysis of T1 weighted image of same > subject. > > > > regards > > Amar Shukla > > > > > > On Mon, 13 Apr 2020, 19:09 Bruce Fischl, > <fischl@nmr.mgh.harvard.edu> wrote: > > Hi Amar > > > > I'm not quite sure I understand your question, but > in FS you > > would use > > the T1 as input to recon-all, then the outputs of > that and the > > diffusion > > data would let you run tracula > > > > cheers > > Bruce > > On Mon, 13 Apr 2020, Amar Shukla wrote: > > > > > > > > External Email - Use Caution > > > > > > Hello Freesurfer, > > > > > > Can we go through the volumetric [surface area > and many more > > ] through DTI > > > images and T1 or t2 weighted images of the same > subject. Can > > we provide > > > common study and can we develop any analysis on > these studies. > > > My research is focused on these direction o or > any kind of > > corelation > > > through different Images . > > > basis of diffusion images and T1 or t2 weighted > images, > > > > > > so please give suggestions and comment on these. > > > > > > > > > > > > -- > > > With Regards, > > > Amar Shukla > > > > > > > > >_______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > >_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > -- > With Regards, > Amar Shukla > Assistant Professor, > M tech AI ANN(2014-2016), > Centre Of Information Technology, > UPES > Contact :+91 897 977 8016 > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- With Regards, Amar Shukla Assistant Professor, M tech AI ANN(2014-2016), Centre Of Information Technology, UPES Contact :+91 897 977 8016
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- With Regards, Amar Shukla Assistant Professor, M tech AI ANN(2014-2016), Centre Of Information Technology, UPES Contact :+91 897 977 8016
External Email - Use Caution
yes
On Sun, May 17, 2020 at 8:54 PM Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
sorry, I'm not sure I understand. bbregister will let you register a T2 to the T1 of the same subject, is that what you want?
cheers Bruce On Sun, 17 May 2020, Amar Shukla wrote:
External Email - Use CautionDear Sir, thank you, Sir, for your valuable advice,
Can I register all the t2 types file with a Structural template, cross-registration we can do or not?
On Mon, May 11, 2020 at 11:04 PM Douglas N. Greve <
dgreve@mgh.harvard.edu>
wrote: It is probably more up-to-date to run bbregister --help
On 5/9/2020 1:10 PM, Bruce Fischl wrote: https://surfer.nmr.mgh.harvard.edu/fswiki/bbregister On Sat, 9 May 2020, Amar Shukla wrote: External Email - Use Caution Dear Sir, Thank you for valuable information, do we have any link or resource to get through this tool. regards Amar Shukla On Sat, May 9, 2020 at 10:31 PM Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote: Hi Amar no restriction - all of those should be registerable using Doug's excellent bbregister tool cheers Bruce On Sat, 9 May 2020, Amar Shukla wrote: > > External Email - Use Caution > > Dear SirDo we have restriction in the registration with a different format > of data like DTI, sMRI, PET and many more or we can go for registration in > any combination in FREE Surfer. > > regards > Amar Shukla > > On Mon, Apr 13, 2020 at 8:14 PM Amar Shukla <amar28071989@gmail.com> wrote: > Thank you so much sir > > On Mon, 13 Apr 2020, 19:56 Bruce Fischl, <fischl@nmr.mgh.harvard.edu> > wrote: > yes, that should be doable if you process in the order I > suggested below > cheers > Bruce > On > Mon, 13 Apr 2020, Amar Shukla wrote: > > > > > External Email - Use Caution > > > > Dear Sir, > > > > Thank you for your precious reply > > > > Actually i am working on to the study of Disease which > have the effect on > > the brain. > > > > 1) First i am using t1 image for analysis of the same > subject of that > > disease. > > > > 2) I am using Diffussion image for the analysis for the > same subject. > > > > So can i make any relation between trac based analysis > of diffusion image > > and Volumetric analysis of T1 weighted image of same > subject. > > > > regards > > Amar Shukla > > > > > > On Mon, 13 Apr 2020, 19:09 Bruce Fischl, > <fischl@nmr.mgh.harvard.edu> wrote: > > Hi Amar > > > > I'm not quite sure I understand your question, but > in FS you > > would use > > the T1 as input to recon-all, then the outputs of > that and the > > diffusion > > data would let you run tracula > > > > cheers > > Bruce > > On Mon, 13 Apr 2020, Amar Shukla wrote: > > > > > > > > External Email - Use Caution > > > > > > Hello Freesurfer, > > > > > > Can we go through the volumetric [surface area > and many more > > ] through DTI > > > images and T1 or t2 weighted images of the same > subject. Can > > we provide > > > common study and can we develop any analysis on > these studies. > > > My research is focused on these direction o or > any kind of > > corelation > > > through different Images . > > > basis of diffusion images and T1 or t2 weighted > images, > > > > > > so please give suggestions and comment on these. > > > > > > > > > > > > -- > > > With Regards, > > > Amar Shukla > > > > > > > > >_______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> > > > > >_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> > > > -- > With Regards, > Amar Shukla > Assistant Professor, > M tech AI ANN(2014-2016), > Centre Of Information Technology, > UPES > Contact :+91 897 977 8016 > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- With Regards, Amar Shukla Assistant Professor, M tech AI ANN(2014-2016), Centre Of Information Technology, UPES Contact :+91 897 977 8016
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- With Regards, Amar Shukla Assistant Professor, M tech AI ANN(2014-2016), Centre Of Information Technology, UPES Contact :+91 897 977 8016
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
oh, then check out the bbregister help and see if you can get it working On Sun, 17 May 2020, Amar Shukla wrote:
External Email - Use Caution
yes
On Sun, May 17, 2020 at 8:54 PM Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: sorry, I'm not sure I understand. bbregister will let you register a T2 to the T1 of the same subject, is that what you want?
cheers Bruce On Sun, 17 May 2020, Amar Shukla wrote: > > External Email - Use Caution > > Dear Sir, > thank you, Sir, for your valuable advice, > > Can I register all the t2 types file with a Structural template, > cross-registration we can do or not? > > > > On Mon, May 11, 2020 at 11:04 PM Douglas N. Greve <dgreve@mgh.harvard.edu> > wrote: > It is probably more up-to-date to run > bbregister --help > > On 5/9/2020 1:10 PM, Bruce Fischl wrote: > https://surfer.nmr.mgh.harvard.edu/fswiki/bbregister > On Sat, 9 May 2020, Amar Shukla wrote: > > > External Email - Use Caution > > Dear Sir, > Thank you for valuable information, do we have > any link or resource to get > through this tool. > > regards > Amar Shukla > > On Sat, May 9, 2020 at 10:31 PM Bruce Fischl > <fischl@nmr.mgh.harvard.edu> > wrote: > Hi Amar > > no restriction - all of those should be > registerable using > Doug's > excellent bbregister tool > > cheers > Bruce > On Sat, 9 May 2020, Amar Shukla wrote: > > > > > External Email - Use > Caution > > > > Dear SirDo we have restriction in the > registration with a > different format > > of data like DTI, sMRI, PET and many > more or we can go for > registration in > > any combination in FREE Surfer. > > > > regards > > Amar Shukla > > > > On Mon, Apr 13, 2020 at 8:14 PM Amar > Shukla > <amar28071989@gmail.com> wrote: > > Thank you so much sir > > > > On Mon, 13 Apr 2020, 19:56 Bruce > Fischl, > <fischl@nmr.mgh.harvard.edu> > > wrote: > > yes, that should be doable if > you process in the order I > > suggested below > > cheers > > Bruce > > On > > Mon, 13 Apr 2020, Amar Shukla > wrote: > > > > > > > > External Email - Use > Caution > > > > > > Dear Sir, > > > > > > Thank you for your precious > reply > > > > > > Actually i am working on to > the study of Disease which > > have the effect on > > > the brain. > > > > > > 1) First i am using t1 image > for analysis of the same > > subject of that > > > disease. > > > > > > 2) I am using Diffussion image > for the analysis for > the > > same subject. > > > > > > So can i make any relation > between trac based analysis > > of diffusion image > > > and Volumetric analysis of T1 > weighted image of same > > subject. > > > > > > regards > > > Amar Shukla > > > > > > > > > On Mon, 13 Apr 2020, 19:09 > Bruce Fischl, > > <fischl@nmr.mgh.harvard.edu> > wrote: > > > Hi Amar > > > > > > I'm not quite sure I > understand your question, > but > > in FS you > > > would use > > > the T1 as input to > recon-all, then the outputs > of > > that and the > > > diffusion > > > data would let you run > tracula > > > > > > cheers > > > Bruce > > > On Mon, 13 Apr 2020, > Amar Shukla wrote: > > > > > > > > > > > External Email > - Use Caution > > > > > > > > Hello Freesurfer, > > > > > > > > Can we go through the > volumetric [surface > area > > and many more > > > ] through DTI > > > > images and T1 or t2 > weighted images of the > same > > subject. Can > > > we provide > > > > common study and can > we develop any analysis > on > > these studies. > > > > My research is focused > on these direction o or > > any kind of > > > corelation > > > > through different > Images . > > > > basis of diffusion > images and T1 or t2 > weighted > > images, > > > > > > > > so please give > suggestions and comment on > these. > > > > > > > > > > > > > > > > -- > > > > With Regards, > > > > Amar Shukla > > > > > > > > > > > > >_______________________________________________ > > > Freesurfer mailing list > > > > Freesurfer@nmr.mgh.harvard.edu > > > > > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > > > >_______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > > -- > > With Regards, > > Amar Shukla > > Assistant Professor, > > M tech AI ANN(2014-2016), > > Centre Of Information Technology, > > UPES > > Contact :+91 897 977 8016 > > > > >_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > -- > With Regards, > Amar Shukla > Assistant Professor, > M tech AI ANN(2014-2016), > Centre Of Information Technology, > UPES > Contact :+91 897 977 8016 > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > -- > With Regards, > Amar Shukla > Assistant Professor, > M tech AI ANN(2014-2016), > Centre Of Information Technology, > UPES > Contact :+91 897 977 8016 > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer-- With Regards, Amar Shukla Assistant Professor, M tech AI ANN(2014-2016), Centre Of Information Technology, UPES Contact :+91 897 977 8016
freesurfer@nmr.mgh.harvard.edu
-
Amar Shukla -
Bruce Fischl -
Douglas N. Greve