Dear Koen,
It worked... Thanks a lot
________________________________ From: Koen Van Leemput koen@nmr.mgh.harvard.edu To: Anupa AV av.anupa@yahoo.com Cc: Freesurfer Mailinglist freesurfer@nmr.mgh.harvard.edu; Bruce Fischl fischl@nmr.mgh.harvard.edu Sent: Thursday, September 19, 2013 12:48 PM Subject: Re: [Freesurfer] recon-all-hippo-subfeilds
Hi, I believe "recon-all -s NC -hippo-subfields" should do that. Please let us know if it doesn't. Koen
On Sep 19, 2013 9:00 AM, "Anupa AV" av.anupa@yahoo.com wrote:
Dear FS experts,
I've a query regarding the recon-all analysis.
I ran recon-all using the following command
eg.
recon-all -i location/nc.nii -s NC -all
I got the analysis done. Now I'm interested to calculate the hippocampal structures.
I knw the command line for that also
recon-all -i location/nc.nii -s NC -all -hippo-subfields
Problem for me is that I've 45 subjects. I ran recon-all without hippo-subfields commands. i.e. from motion correction to Ex-vivo Entorhinal Cortex Label rh. (log file)
Is there any way to do hippo-sufields alone than running the whole steps again (which is very time consuming).
Thanks in advance.
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