Hi Yann (and anyone else with mri_cc failures on mac), We have a fix that we'll include in an upcoming 7.1.1 patch release. If you'd like a quick local fix, you can update your distribution with the new version of mri_cc by running the following commands (this might require sudo): cd $FREESURFER_HOME/bin rm mri_cc curl https://surfer.nmr.mgh.harvard.edu/pub/dist/tmp_patch/mri_cc -O mri_cc chmod +x mri_cc Please let us know if this does not solve your issue. Andrew
From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Yann Quidé yannquide@gmail.com Reply-To: FS Help freesurfer@nmr.mgh.harvard.edu Date: Monday, June 29, 2020 at 2:35 AM To: FS Help freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Error recon-all mri_cc
External Email - Use Caution Hi team,
I appreciate everyone is busy, but did anyone have time to look at my subject? It was uploaded on June 18. It’s called yannquide.tar.gz
Thanks for your time.
Yann
On 22 Jun 2020, at 12:51 pm, Yann Quidé <yannquide@gmail.commailto:yannquide@gmail.com> wrote:
Hi team,
I was just wondering if you received my file and if you had time to look at it?
Thanks,
Yann
On 18 Jun 2020, at 7:08 am, Yann Quidé <yannquide@gmail.commailto:yannquide@gmail.com> wrote:
Hi Doug,
Thanks for this. I sent the file; it’s called yannquide.tar.gz.
Yann
On 16 Jun 2020, at 11:56 pm, Douglas N. Greve <dgreve@mgh.harvard.edumailto:dgreve@mgh.harvard.edu> wrote:
Can you upload the subject so I can take a look? Instructions below
From the linux command line, Create the file you want to upload, eg, cd $SUBJECTS_DIR tar cvfz subject.tar.gz ./subject Now log into our anonymous FTP site: ftp surfer.nmr.mgh.harvard.eduhttp://surfer.nmr.mgh.harvard.edu/ It will ask you for a user name: use "anonymous" (no quotes) It will ask you for a password: use "anonymous" (no quotes) cd transfer/incoming binary put subject.tar.gz Send an email that the file has been and the name of the file.
On 6/15/2020 8:28 PM, Yann Quidé wrote: External Email - Use Caution
Hi there,
I am using Freesurfer v7.1.0 and encounter an error for few of my subjects only. Recon-all finishes with errors, and it seems this occurs during the segmentation.
What can I do to fix this?
I attached the recon-all log for one of my subject.
Thanks,
Yann _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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