[Freesurfer] Help with desired (sub)cortical GM thickness

Daniele Perrone

16 Nov 2015 16 Nov '15

9:24 a.m.

Hi Freesurfer Experts,

I successfully used FreeSurfer to segment (sub)cortical GM using the "recon-all" pipeline, and I am wondering now how to control the final thickness of segmented GM. In other words, for a single subject, I want to obtain GM masks and parcels that are volumetrically thicker/thinner.

Is there some FreeSurfer parameter I can vary?

Thanks for your help,

Daniele

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