Hi,
I have a short question about the additional T2 scan as well.
If I perform the full recon-all; recon-all -s mySubject -i myT1.nii -T2 myT2.nii -T2pial -all -hippocampal-subfields-T1T2 do I still have to precise myT2scan.nii.gz T2 for using the t2 for the hippocampal subfields as well ? or it will automatically take the t2 precised for the t2pial ?
Cheers, Pierre
On Mon, Sep 5, 2016 at 4:13 PM, Iglesias, Eugenio e.iglesias@ucl.ac.uk wrote:
The same one; just change the input file and the analysis ID
- T2: recon-all -s mySubject -hippocampal-subfields-T1T2
myT2scan.nii.gz T2
- FLAIR: recon-all -s mySubject -hippocampal-subfields-T1T2
myFLAIRscan.nii.gz FLAIR
Cheers,
/Eugenio
Juan Eugenio Iglesias Senior Research Fellow Translational Imaging Group University College London http://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/
On 5 Sep 2016, at 15:10, Vaz pandolfo, Renata rvp8@njit.edu wrote:
Dear FS experts,
I have a question about the "segmentation with an additional scan - multispectral segmentation" on the hippocampal sf segmentation, FS dev. 6.0.
For controls on which I had already run recon-all -all, I added the T2 sequence with the following command:
recon-all -s <subject_name> \ -hippocampal-subfields-T1T2 <file name of additional scan> <analysisID>
Now, if I want to do the same thing with FLAIR as the additional input, which flag should I use?
Thank you,
Renata
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