Re: [Freesurfer] Help with desired (sub)cortical GM thickness

Hi Daniele

I guess you could play with the intensity thresholds in mris_make_surfaces, although we do try to do this in an intensity-independent manner (to first order)

Bruce

On Mon, 16 Nov 2015, Daniele Perrone wrote:

Hi Freesurfer Experts,

I successfully used FreeSurfer to segment (sub)cortical GM using the "recon-all" pipeline, and I am wondering now how to control the final thickness of segmented GM. In other words, for a single subject, I want to obtain GM masks and parcels that are volumetrically thicker/thinner.

Is there some FreeSurfer parameter I can vary?

Thanks for your help,

Daniele

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer