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Dear Freesurfer Developers,
My goal is to build a study-specific pediatric template brain to rerun the recon-all-all. I am encountering the same error while running make_average_subject Freesurfer version 6.0.0 on MacOS High Sierra 10.13.6 as described here and implemented the suggested changes replacing mri_glmfit-sim, make_average_subject, make_average_surface, and mri_aparc2aseg: https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2017-November/054933....
Yet, the the mri/norm.mgz file is still missing (see attached logs).
Exits on:
#@# AParc-to-ASeg aparc Mon Jul 16 17:45:19 CEST 2018 /Volumes/FB-LIP/MRI/Jacobs/Freesurfer2/Jacobs/avgsubjectT1 \n mri_aparc2aseg --s avgsubjectT1 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /Volumes/Mac/Applications/freesurfer/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt --no-relabel \n /Volumes/Mac/Applications/freesurfer/bin/mri_aparc2aseg: Exec format error. Binary file not executable. Darwin lip-osx-004040 17.7.0 Darwin Kernel Version 17.7.0: Thu Jun 21 22:53:14 PDT 2018; root:xnu-4570.71.2~1/RELEASE_X86_64 x86_64
recon-all -s avgsubjectT1 exited with ERRORS at Mon Jul 16 17:45:19 CEST 2018
Any help would be appreciated.
Thanks,
Laurel
Laurel Raffington
Postdoctoral Researcher
Center for Lifespan Psychology
Max Planck Institute for Human Development
Lentzeallee 94, 14195 Berlin, Germany