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Dear Freesurfer experts,
I ran the LGI in several subjects and all of them have finished without errors. However when I opened the [lr]h.pial_lgi surfaces in tksurfer I noticed that some part of the brain are not overlayed.
What could be the reason?
Do you recommend to do some specific quality control on the LGI output?
I send to you a screenshot in attachment.
Best regards,
[image: Screen Shot 2019-11-27 at 16.46.14.png] [image: Screen Shot 2019-11-27 at 16.45.25.png]