Hi all,
I ran a few cases through freesurfer5.3 last night and found that they all exited with the same error. This is the input that I used:
recon-all -s 01100.t1-realign-masked -i /tmp/01100.t1-realign-masked.nii.gz -autorecon1 && cp /projects/pnl/software/freesurfer5.3b/subjects/01100.t1-realign-masked/mri/T1.mgz /projects/pnl/software/freesurfer5.3b/subjects/01100.t1-realign-masked/mri/brainmask.mgz && recon-all -autorecon2 -subjid 01100.t1-realign-masked && recon-all -autorecon3 -subjid 01100.t1-realign-masked && mv /projects/pnl/software/freesurfer5.3b/subjects/01100.t1-realign-masked 01100.freesurfer
I've attached the recon-all.log file which shows the following error:
IFLAG= -1 LINE SEARCH FAILED. SEE DOCUMENTATION OF ROUTINE MCSRCH ERROR RETURN OF LINE SEARCH: INFO= 3 POSSIBLE CAUSES: FUNCTION OR GRADIENT ARE INCORRECT OR INCORRECT TOLERANCESoutof QuasiNewtonEMA: 007: -log(p) =-0.0 tol 0.000010
Thank you so much for any help, best,
Elisabetta del Re
-- Elisabetta del Re, instructor, psychiatry, Harvard Medical School