Dear Eugenio,
The freesurfer version commands tells me that I run the freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c version. Before using segmentHA_T1.sh command, I run the recon-all -all -s bert one and it worked. Of course, recon-all also worked, telling be how to use it properly.
Regards,
Alexandre
2017-10-26 17:08 GMT+02:00 Alexandre Obert obert.alexandre@gmail.com:
Dear all,
I'm would like to run a hippocampal segmentation on my data. However, I'm a beginner with freesurfer thus, I juste try to run the commands with subject training data. I first try to run commands following the recent development ( https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfieldsAndNucleiO fAmygdala). However, terminal says that the command segmentHA.sh doesn't exist.
I guess that it could be linked to the fact that I used bash in Windows but I can't find a way to check this..;
Any idea ?
Regards,
Alexandre