This is the output: ln: failed to create symbolic link 'lh.white.H': Operation not supported
On Feb 8, 2017, at 10:38 AM, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:
can you run the commands below and tell me what happens?
cd /home/jamielh/Volumes/Hanson/Pardini_Projects/K_award/10007/surf ln -s lh.white.preaparc.H lh.white.H
On 02/08/2017 09:44 AM, Taylor Hilton wrote:
Apologies, that was an old log, attaching the relevant one here.
On Feb 7, 2017, at 6:02 PM, Douglas Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu>> wrote:
According to the log file, the error is that you need a new license:
GNU libc version: 2.23 ERROR: Systems running GNU glibc version greater than 2.15 require a newly formatted license file (it's free). Please download a new one from the following page: *MailScanner has detected a possible fraud attempt from "na01.safelinks.protection.outlook.com http://na01.safelinks.protection.outlook.com/" claiming to be* https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fsurfer.nmr.m... https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Fregistration.html&data=01%7C01%7CBTH22%40pitt.edu%7C446b463cf36a4889e95708d450389542%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=CHwu5i2iSGCh56pKWyVyp3ygYwdOQ0WSEBes26448ro%3D&reserved=0
On 2/7/17 12:49 PM, Taylor Hilton wrote:
Yes I’ll attach it here. I’m using a linux server(Ubuntu).
On Feb 7, 2017, at 12:32 PM, Douglas Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu>> wrote:
Can you send the full recon-all.log? What platform are you running on?
On 2/7/17 11:19 AM, Taylor Hilton wrote:
Hi all,
Having trouble with an error running "recon-all -subjid ${i} -autorecon2” across all subjects.
Below is where it has the error in recon-all.log. We also tried running the last command (“ln -s …”) manually and got the error “ln: failed to create symbolic link ‘lh.white.H’: Operation not supported.” whereas the rest of the commands ran normally.
#-------------------------------------------- #@# Curv .H and .K lh Tue Feb 7 07:29:43 EST 2017 /home/jamielh/Volumes/Hanson/Pardini_Projects/K_award/10007/surf
mris_curvature -w lh.white.preaparc
total integrated curvature = 18.936*4pi (237.960) --> -18 handles ICI = 230.2, FI = 1697.2, variation=29040.790 writing Gaussian curvature to ./lh.white.preaparc.K...done. writing mean curvature to ./lh.white.preaparc.H...done. rm -f lh.white.H ln -s lh.white.preaparc.H lh.white.H Linux pfc 4.4.0-59-generic #80-Ubuntu SMP Fri Jan 6 17:47:47 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s 10007 exited with ERRORS at Tue Feb 7 07:29:46 EST 2017
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————————————————————————————————————————————————
We also tried the solution laid out in this thread with no luck: *MailScanner has detected a possible fraud attempt from "na01.safelinks.protection.outlook.com http://na01.safelinks.protection.outlook.com/" claiming to be* https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmail.nmr.mg... https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fpipermail%2F%2Ffreesurfer%2F2014-September%2F040473.html&data=01%7C01%7CBTH22%40pitt.edu%7C446b463cf36a4889e95708d450389542%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=KAGwvmXgr4Zkz%2FWWQAdxAzIrjRurig4783AvKVU3lGs%3D&reserved=0 <https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmail.nmr.mg... https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fpipermail%2F%2Ffreesurfer%2F2014-September%2F040473.html&data=01%7C01%7CBTH22%40pitt.edu%7Cac260601488f4461199608d44f809d2e%7C9ef9f489e0a04eeb87cc3a526112fd0d%7C1&sdata=zqIKnda0hwYWkR7BguoviwK2l8Vy3aJzjBXabpTb1Zc%3D&reserved=0>
Any help is very appreciated!
- B. Taylor Hilton
Lab Data Coordinator, University of Pittsburgh
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