Re: [Freesurfer] mri_label2vol: how to make the opposite direction?

I am sorry, but I still struggle to make it work :( Here is my syntax: mri_cor2label --i my_Analyze_mask.nii --l ./freeSurferMask.label I am getting "ERROR: must supply a label id" error message. I do not have any label id, because it's my custom mask, which was created in the SPM.

On Fri, Apr 9, 2010 at 11:14 PM, Douglas N Greve greve@nmr.mgh.harvard.eduwrote:

It will still work.

from mri_cor2label --help :

Note: the name of this program is a bit misleading as it will operate on anything readble by mri_convert (eg, mgz, mgh, nifti, bhdr, analyze, etc).

John Gelburg wrote:

...

thanks, but isn't COR volume and my ANALYZE image is not the same thing?

On Fri, Apr 9, 2010 at 8:02 PM, Douglas N Greve < greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:

try mri_cor2label

John Gelburg wrote:

   Hi,

   I have ANLYZE binary mask which I would like to convert to
   FreeSurfer labels. Is there any more automatic way to do it
   than loading it as an overlay and then selecting manually as a
   label?

   Thanks for help,
   John

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-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu

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-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html