Hi freesurfer gurus
We are trying to preprocess of Tutorial fMRI Data. Following Freesurfer wiki,we adhered to hierarchy and type ' preproc-sess -s mgh-101.1 -fwhm 5'. But the following Error was displayed.
****************************** ************************************************************* [root@localhost my-study]# preproc-sess -s mgh-101.1 -fwhm 5 -------------------------------------------------------------- preproc-sess logfile is log/preproc-sess.log -------------------------------------------------------------- instem f mc 1 f fmc stc 0 fmc sm 1 fmc fmcsm5 mask 1 brain mgh-101.1 MC ----------------------------- 2009年 9月 3日 木曜日 13:46:33 JST /usr/local/freesurfer/fsfast-tutorial/my-study mc-sess -fstem f -fmcstem fmc -s mgh-101.1 -d /usr/local/freesurfer/fsfast-tutorial/my-study -fsd bold -new -update -no-inorm ---------------------------------------- Logfile is /usr/local/freesurfer/fsfast-tutorial/my-study/log/mc-mgh-101.1-bold.log ------------------------------------------- /usr/local/freesurfer/fsfast-tutorial/my-study/mgh-101.1 RunList: 003 005 007 010 Targ Stem is 003/f ------- ************************** ----------- ------- Motion Correcting Run 003 ----------- ------- ************************** ----------- sess = mgh-101.1 2009年 9月 3日 木曜日 13:46:34 JST mc-afni2 --i 003/f.nii --t 003/f.nii --frame 0 --o 003/fmc.nii --mcdat 003/fmc.mcdat /usr/local/freesurfer/fsfast-tutorial/my-study/mgh-101.1/bold mri_info --nframes --o /tmp/mriinfo.12296 003/f.nii log file is 003/fmc.nii.mclog mcdat file is 003/fmc.mcdat tmp dir is 003/tmp.mc-afni2.12296 #@# -------------------------------- /usr/local/freesurfer/fsfast-tutorial/my-study/mgh-101.1/bold mri_convert 003/f.nii 003/tmp.mc-afni2.12296/tempvol.nii.gz --nskip 0 --ndrop 84 -odt float mri_convert 003/f.nii 003/tmp.mc-afni2.12296/tempvol.nii.gz --nskip 0 --ndrop 84 -odt float nskip = 0 ndrop = 84 $Id: mri_convert.c,v 1.146.2.5 2009/04/08 18:40:23 nicks Exp $ reading from 003/f.nii... TR=3000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.9973, -0.0712038, 0.0179835) j_ras = (0.0625429, -0.951817, -0.300222) k_ras = (0.038494, -0.298286, 0.9537) changing data type from 4 to 3 (noscale = 0)... Dropping last 84 frames writing to 003/tmp.mc-afni2.12296/tempvol.nii.gz... #@# -------------------------------- /usr/local/freesurfer/fsfast-tutorial/my-study/mgh-101.1/bold mri_convert 003/f.nii 003/tmp.mc-afni2.12296/invol.nii.gz -odt float mri_convert 003/f.nii 003/tmp.mc-afni2.12296/invol.nii.gz -odt float $Id: mri_convert.c,v 1.146.2.5 2009/04/08 18:40:23 nicks Exp $ reading from 003/f.nii... TR=3000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.9973, -0.0712038, 0.0179835) j_ras = (0.0625429, -0.951817, -0.300222) k_ras = (0.038494, -0.298286, 0.9537) changing data type from 4 to 3 (noscale = 0)... writing to 003/tmp.mc-afni2.12296/invol.nii.gz... #@# -------------------------------- /usr/local/freesurfer/fsfast-tutorial/my-study/mgh-101.1/bold 3dvolreg -verbose -dfile 003/fmc.mcdat -base 003/tmp.mc-afni2.12296/tempvol.nii.gz -prefix 003/tmp.mc-afni2.12296/outvol.nii.gz 003/tmp.mc-afni2.12296/invol.nii.gz 3dvolreg: error while loading shared libraries: libXp.so.6: cannot open shared object file: No such file or directory ERROR: 3dvolreg ERROR: mc-sess failed
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If we need to download AFNI(or 3dvolreg),where should we put them(or 3dvolreg)? Please give us your suggestion. Thank you
Kenta