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Thank you for your quick response. Please, can you kindly assist me with freesurfer input image template for sT1-weighted? How do I solve this orientation problem?
Thank you.
On Fri, 6 Jan 2023, 14:34 Huang, Yujing, YHUANG43@mgh.harvard.edu wrote:
It looks like there is a problem with your input dicom file - image orientation tag is missing.
*From:* freesurfer-bounces@nmr.mgh.harvard.edu < freesurfer-bounces@nmr.mgh.harvard.edu> *On Behalf Of *MANSON ERIC NAAB *Sent:* Thursday, January 5, 2023 11:15 PM *To:* Freesurfer@nmr.mgh.harvard.edu *Subject:* [Freesurfer] recon-all terminates with error
External Email - Use Caution *Dear FreeSurfer experts,
I am a first time FreeSurfer user trying to run a recon-all for a sT1_W image. However, recon-all terminates with an error "tag image orientation not found" I need help on how to resolve this.
Kindly find the recon-all.log file. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1cyshhNaiz2kv9367zAck0S2C8VINgCWouegtdexAFGectd... The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://secure-web.cisco.com/1R_7R1drwnmipruEFp9CeuohI96c58n_wwMNhxtj8NrvwpT... < https://secure-web.cisco.com/1R_7R1drwnmipruEFp9CeuohI96c58n_wwMNhxtj8NrvwpT... . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.