Hi Jason
do you have matlab installed? If so, you need to setup your environment so that it is in your path. This doesn't really have anything to do with FreeSurfer - you need to be able to type "matlab" from the command line and have it find the binary
cheers Bruce On Wed, 28 Oct 2015, Jason Haberman wrote:
Dear Freesurfer Community, I am very new to Freesurfer and am trying to work my way through the tutorial. I am currently stuck at the mkcontrast-sess -analysis my-workmem.sm05.lh -contrast encode-v-base -a 1 section, having received the error: ERROR: cannot find matlab. Is it in your path?
I have searched the forums and found one instance of this being reported, but the suggested solutions did not resolve the problem. Is there anyway further recommendations you might make?
I have attached a screenshot of my .bash_profile and of my attempts to run mkcontrast. I would be most grateful for any assistance you might offer.
Warm Regards, Jason
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Jason Haberman Assistant Professor of Psychology Rhodes College Clough Hall 119 901-843-3231 http://jasonmarchaberman.wordpress.com/