Of course I put the subject name that I prefer to keep hidden! thanks
Valentina
-----Original Message----- From: Doug Greve [mailto:greve@nmr.mgh.harvard.edu] Sent: Wednesday, March 08, 2006 4:03 PM To: Durastanti, Valentina (NIH/NINDS) [F] Cc: martinos-tech@yahoogroups.com; Freesurfer Mailing List Subject: Re: autorecon1
Hi Valentina,
did you actually put "<subject name>" on your command-line? <subject name> is supposed to be the name of your subject, eg, "bert" (but without the quotes). What's a "Flug"?
For your second question, there will not be a brain.mgz after the first step, but there will be a brainmask.mgz. Also, please see surfer.nmr.mgh.harvard.edu/fswiki/BugReporting for how to pose questions so that we can answer them better.
thanks
doug
Durastanti, Valentina (NIH/NINDS) [F] wrote:
Hi, I have 2 questions:
Number 1 when I try to run the first step: recon-all -subjid <su -autorecon1 He said: ERROR Flug <subject name> unrecognized
Number 2 After the first step of a subject I can't find the brain.mgz
Thanks Valentina