Hi John,
Which version of FreeSurfer are you running?
Emma
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Emma Boyd
Research Technician II
Laboratory for Computational Neuroimaging
Martinos Center for Biomedical Imaging
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of John Anderson John.anderso@protonmail.com Sent: Thursday, August 31, 2017 12:17 PM To: Freesurfer support list Subject: Re: [Freesurfer] aparc.DKTatlas+aseg.mgz
Dear experts, looking into the output of Freesurfer in this page https://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllOutputFiles I see that there should be a file named "aparc.DKTatlas+aseg.mgz". Is this atlas can be generated with the presence of FLAIR images.
When i run recon-all without FLAIR or T2 I don't see this atlas!! Is this atlas FLAIR -based?
thank you for any clarification John
-------- Original Message -------- Subject: aparc.DKTatlas+aseg.mgz Local Time: August 30, 2017 7:49 PM UTC Time: August 30, 2017 11:49 PM From: John.anderso@protonmail.com To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu
Dear experts, looking into the output of Freesurfer in this page https://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllOutputFiles I see that there should be a file named "aparc.DKTatlas+aseg.mgz". Do I need FLAIR images to get this file.
I ran the command recon-all --s subj --all and I can';t find this file
thank you for any clarification John