Hi Anastasia et al.,
I previously had TRACULA running wonderfully on a test dataset. I was tasked with writing an in-house step-by-step manual for dummies. Since then, a colleague has followed my manual with a new dataset and had problems. After trying to determine whether it was her install or something about her data and failing to find anything, I returned to re-run the subject I had already successfully processed. Nothing has changed in my install (TRAC-all version etc) ODDLY, this re-run is suffering from the same problem as my colleague.
We ran trac-all -prep -dmrirc and it exited without any errors. However, there seem to be some files missing from the output:
control.dat
data.nii.gz
nodif_brain_mask.nii.gz
Bedpostx will not run due to the *data* file being missing and I'm sure the other missing files will cause problems.
What is going on?
I knew to look for these files as at some point I found the following list for the \dmri. I can not re-find a post with this list so I'm sorry if it related to a solution to our current problem.
Please help
Richard
brain_anat_mni.nii.gz
dtifit_L2.nii.gz dwi_orig_flip.nii.gz
brain_anat.nii.gz
dtifit_L3.nii.gz
dwi_orig.mghdti.bvals
brain_anat_orig.nii.gz dtifit_MD.nii.gz
dwi_orig.mghdti.bvecs
bvals
dtifit_MO.nii.gz dwi_orig.nii.gz
bvecs
dtifit_S0.nii.gz dwi_snr.txt
bvecs.norot
dtifit_V1.nii.gz lowb_brain.nii.gz
control.dat
dtifit_V2.nii.gz
lowb.nii.gz
data.nii.gz
dtifit_V3.nii.gz
mni
dtifit_FA.nii.gz
dwi.ecclog
nodif_brain_mask.nii.gz
dtifit_L1.nii.gz
dwi.nii.gz
xfms