Re: [Freesurfer] Two problematic participants -- unable to run recon-all

you don't need a password. Just use anonymous as your user name and your email as the password I think On Fri, 30 Nov 2018, Rosalia Dacosta Aguayo wrote:

External Email - Use Caution

HI Bruce,

I would like to use Email File Drop but I am having problems, not sure if with my email or with my password. Could you help me with this? Thanks

On Tue, Nov 27, 2018 at 4:27 PM Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: instructions are here:

  https://surfer.nmr.mgh.harvard.edu/fswiki/FtpFileExchange

  On Tue, 27 Nov
  2018, Rosalia Dacosta Aguayo wrote:

  >
  >         External Email - Use Caution        
  >
  > Hi Bruce,
  > Could you send me a link to upload one subject? I have never
  done this before.
  >
  > Thank you,
  > Rosalia
  >
  > El mar., 27 nov. 2018 16:08, Bruce Fischl
  <fischl@nmr.mgh.harvard.edu> escribió:
  >       Hi Rosalia
  >
  >       if you tar and gzip the entire subject folder of one of
  the problematic
  >       subjects and put it on our ftp site we will take a 
  look.
  >
  >       Alternatively, you can take a look at this tutorial:
  >
  >      https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TopologicalDefect_fre
  eview
  >
  >       which should help you correct the problem
  >
  >       cheers
  >       Bruce
  >
  >
  >       On
  >       Tue, 27 Nov
  >       2018, Rosalia Dacosta Aguayo wrote:
  >
  >       >
  >       >         External Email - Use Caution        
  >       >
  >       > Dear Free Surfer experts,
  >       >
  >       > I have run recon-all for all my participants and I am
  editing the brainmask and making
  >       control
  >       > points. I have seen that for two participants, Free
  Surfer were not run. I run those
  >       two participant
  >       > again and I saw that they were stuck in the vertex
  correction, more than 30.000. I do
  >       not know how
  >       > to cope with this problem and I would greatly
  appreciate any help with this.
  >       > Would it be possible to upload these two subjects so
  you can inspect them and tell me
  >       what is
  >       > happening with them?
  >       >
  >       > Best wishes,
  >       > Rosalia
  >       >
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