External Email - Use Caution
Dear Free Surfer experts,
I have run recon-all for all my participants and I am editing the brainmask and making control points. I have seen that for two participants, Free Surfer were not run. I run those two participant again and I saw that they were stuck in the vertex correction, more than 30.000. I do not know how to cope with this problem and I would greatly appreciate any help with this. Would it be possible to upload these two subjects so you can inspect them and tell me what is happening with them?
Best wishes, Rosalia
Hi Rosalia
if you tar and gzip the entire subject folder of one of the problematic subjects and put it on our ftp site we will take a look.
Alternatively, you can take a look at this tutorial:
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TopologicalDefect_freev...
which should help you correct the problem
cheers Bruce
On Tue, 27 Nov 2018, Rosalia Dacosta Aguayo wrote:
External Email - Use Caution
Dear Free Surfer experts,
I have run recon-all for all my participants and I am editing the brainmask and making control points. I have seen that for two participants, Free Surfer were not run. I run those two participant again and I saw that they were stuck in the vertex correction, more than 30.000. I do not know how to cope with this problem and I would greatly appreciate any help with this. Would it be possible to upload these two subjects so you can inspect them and tell me what is happening with them?
Best wishes, Rosalia
External Email - Use Caution
Hi Bruce,
Could you send me a link to upload one subject? I have never done this before.
Thank you, Rosalia
El mar., 27 nov. 2018 16:08, Bruce Fischl fischl@nmr.mgh.harvard.edu escribió:
Hi Rosalia
if you tar and gzip the entire subject folder of one of the problematic subjects and put it on our ftp site we will take a look.
Alternatively, you can take a look at this tutorial:
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TopologicalDefect_freev...
which should help you correct the problem
cheers Bruce
On Tue, 27 Nov 2018, Rosalia Dacosta Aguayo wrote:
External Email - Use CautionDear Free Surfer experts,
I have run recon-all for all my participants and I am editing the
brainmask and making control
points. I have seen that for two participants, Free Surfer were not run.
I run those two participant
again and I saw that they were stuck in the vertex correction, more than
30.000. I do not know how
to cope with this problem and I would greatly appreciate any help with
this.
Would it be possible to upload these two subjects so you can inspect
them and tell me what is
happening with them?
Best wishes, Rosalia
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
instructions are here:
https://surfer.nmr.mgh.harvard.edu/fswiki/FtpFileExchange
On Tue, 27 Nov 2018, Rosalia Dacosta Aguayo wrote:
External Email - Use Caution
Hi Bruce, Could you send me a link to upload one subject? I have never done this before.
Thank you, Rosalia
El mar., 27 nov. 2018 16:08, Bruce Fischl fischl@nmr.mgh.harvard.edu escribió: Hi Rosalia
if you tar and gzip the entire subject folder of one of the problematic subjects and put it on our ftp site we will take a look. Alternatively, you can take a look at this tutorial: https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TopologicalDefect_freeview which should help you correct the problem cheers Bruce On Tue, 27 Nov 2018, Rosalia Dacosta Aguayo wrote: > > External Email - Use Caution > > Dear Free Surfer experts, > > I have run recon-all for all my participants and I am editing the brainmask and making control > points. I have seen that for two participants, Free Surfer were not run. I run those two participant > again and I saw that they were stuck in the vertex correction, more than 30.000. I do not know how > to cope with this problem and I would greatly appreciate any help with this. > Would it be possible to upload these two subjects so you can inspect them and tell me what is > happening with them? > > Best wishes, > Rosalia > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
HI Bruce,
I would like to use Email File Drop but I am having problems, not sure if with my email or with my password. Could you help me with this? Thanks
On Tue, Nov 27, 2018 at 4:27 PM Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
instructions are here:
https://surfer.nmr.mgh.harvard.edu/fswiki/FtpFileExchange
On Tue, 27 Nov 2018, Rosalia Dacosta Aguayo wrote:
External Email - Use CautionHi Bruce, Could you send me a link to upload one subject? I have never done this
before.
Thank you, Rosalia
El mar., 27 nov. 2018 16:08, Bruce Fischl fischl@nmr.mgh.harvard.edu
escribió:
Hi Rosalia if you tar and gzip the entire subject folder of one of theproblematic
subjects and put it on our ftp site we will take a look. Alternatively, you can take a look at this tutorial:https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TopologicalDefect_freev...
which should help you correct the problem cheers Bruce On Tue, 27 Nov 2018, Rosalia Dacosta Aguayo wrote: > > External Email - Use Caution > > Dear Free Surfer experts, > > I have run recon-all for all my participants and I am editingthe brainmask and making
control > points. I have seen that for two participants, Free Surfer werenot run. I run those
two participant > again and I saw that they were stuck in the vertex correction,more than 30.000. I do
not know how > to cope with this problem and I would greatly appreciate anyhelp with this.
> Would it be possible to upload these two subjects so you caninspect them and tell me
what is > happening with them? > > Best wishes, > Rosalia > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
you don't need a password. Just use anonymous as your user name and your email as the password I think On Fri, 30 Nov 2018, Rosalia Dacosta Aguayo wrote:
External Email - Use Caution
HI Bruce,
I would like to use Email File Drop but I am having problems, not sure if with my email or with my password. Could you help me with this? Thanks
On Tue, Nov 27, 2018 at 4:27 PM Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: instructions are here:
https://surfer.nmr.mgh.harvard.edu/fswiki/FtpFileExchange On Tue, 27 Nov 2018, Rosalia Dacosta Aguayo wrote: > > External Email - Use Caution > > Hi Bruce, > Could you send me a link to upload one subject? I have never done this before. > > Thank you, > Rosalia > > El mar., 27 nov. 2018 16:08, Bruce Fischl <fischl@nmr.mgh.harvard.edu> escribió: > Hi Rosalia > > if you tar and gzip the entire subject folder of one of the problematic > subjects and put it on our ftp site we will take a look. > > Alternatively, you can take a look at this tutorial: > > https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TopologicalDefect_fre eview > > which should help you correct the problem > > cheers > Bruce > > > On > Tue, 27 Nov > 2018, Rosalia Dacosta Aguayo wrote: > > > > > External Email - Use Caution > > > > Dear Free Surfer experts, > > > > I have run recon-all for all my participants and I am editing the brainmask and making > control > > points. I have seen that for two participants, Free Surfer were not run. I run those > two participant > > again and I saw that they were stuck in the vertex correction, more than 30.000. I do > not know how > > to cope with this problem and I would greatly appreciate any help with this. > > Would it be possible to upload these two subjects so you can inspect them and tell me > what is > > happening with them? > > > > Best wishes, > > Rosalia > > > >_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
Oh, sorry Bruce for not understanding it. I sent the files directly to you. Sorry for that as well as this is something it should never be done. Please, accept my apologies.
Yours sincerely, Rosalia
On Fri, Nov 30, 2018 at 7:14 PM Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
you don't need a password. Just use anonymous as your user name and your email as the password I think On Fri, 30 Nov 2018, Rosalia Dacosta Aguayo wrote:
External Email - Use CautionHI Bruce,
I would like to use Email File Drop but I am having problems, not sure if with my email or with my password. Could you help me with this? Thanks
On Tue, Nov 27, 2018 at 4:27 PM Bruce Fischl <fischl@nmr.mgh.harvard.edu
wrote: instructions are here:
https://surfer.nmr.mgh.harvard.edu/fswiki/FtpFileExchange On Tue, 27 Nov 2018, Rosalia Dacosta Aguayo wrote: > > External Email - Use Caution > > Hi Bruce, > Could you send me a link to upload one subject? I have never done this before. > > Thank you, > Rosalia > > El mar., 27 nov. 2018 16:08, Bruce Fischl <fischl@nmr.mgh.harvard.edu> escribió: > Hi Rosalia > > if you tar and gzip the entire subject folder of one of the problematic > subjects and put it on our ftp site we will take a look. > > Alternatively, you can take a look at this tutorial: > >https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TopologicalDefect_fre
eview > > which should help you correct the problem > > cheers > Bruce > > > On > Tue, 27 Nov > 2018, Rosalia Dacosta Aguayo wrote: > > > > > External Email - Use Caution > > > > Dear Free Surfer experts, > > > > I have run recon-all for all my participants and I am editing the brainmask and making > control > > points. I have seen that for two participants, Free Surfer were not run. I run those > two participant > > again and I saw that they were stuck in the vertex correction, more than 30.000. I do > not know how > > to cope with this problem and I would greatly appreciate any help with this. > > Would it be possible to upload these two subjects so you can inspect them and tell me > what is > > happening with them? > > > > Best wishes, > > Rosalia > > > >_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
no worries On Fri, 30 Nov 2018, Rosalia Dacosta Aguayo wrote:
External Email - Use Caution
Oh, sorry Bruce for not understanding it. I sent the files directly to you. Sorry for that as well as this is something it should never be done. Please, accept my apologies.
Yours sincerely, Rosalia
On Fri, Nov 30, 2018 at 7:14 PM Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: you don't need a password. Just use anonymous as your user name and your email as the password I think On Fri, 30 Nov 2018, Rosalia Dacosta Aguayo wrote:
> > External Email - Use Caution > > HI Bruce, > > I would like to use Email File Drop but I am having problems, not sure if > with my email or with my password. > Could you help me with this? > Thanks > > On Tue, Nov 27, 2018 at 4:27 PM Bruce Fischl <fischl@nmr.mgh.harvard.edu> > wrote: > instructions are here: > > https://surfer.nmr.mgh.harvard.edu/fswiki/FtpFileExchange > > On Tue, 27 Nov > 2018, Rosalia Dacosta Aguayo wrote: > > > > > External Email - Use Caution > > > > Hi Bruce, > > Could you send me a link to upload one subject? I have never > done this before. > > > > Thank you, > > Rosalia > > > > El mar., 27 nov. 2018 16:08, Bruce Fischl > <fischl@nmr.mgh.harvard.edu> escribió: > > Hi Rosalia > > > > if you tar and gzip the entire subject folder of one of > the problematic > > subjects and put it on our ftp site we will take a > look. > > > > Alternatively, you can take a look at this tutorial: > > > > https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TopologicalDefect_fr e > eview > > > > which should help you correct the problem > > > > cheers > > Bruce > > > > > > On > > Tue, 27 Nov > > 2018, Rosalia Dacosta Aguayo wrote: > > > > > > > > External Email - Use Caution > > > > > > Dear Free Surfer experts, > > > > > > I have run recon-all for all my participants and I am > editing the brainmask and making > > control > > > points. I have seen that for two participants, Free > Surfer were not run. I run those > > two participant > > > again and I saw that they were stuck in the vertex > correction, more than 30.000. I do > > not know how > > > to cope with this problem and I would greatly > appreciate any help with this. > > > Would it be possible to upload these two subjects so > you can inspect them and tell me > > what is > > > happening with them? > > > > > > Best wishes, > > > Rosalia > > > > > >_______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > >_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Bruce Fischl -
Rosalia Dacosta Aguayo