Re: [Freesurfer] extracting mean thickness values across subjects from qdec clusters

Did you look at the mri_glmfit-sim --help yet?

On 04/01/2014 04:42 PM, Tudor Popescu wrote:

Sorry I know that our questions often have an answer in the documentation, but this case does not seem straightforward. I ran the following command mri_glmfit-sim --glmdir /media/math/all38subj/qdec/A2SepGroup_C_DODS_lgi_lh --cache 1.3 --sim-sign abs ..from either $SUBJECTS_DIR, the qdec folder, and the design name folder - but in all cases I get errors such as "Flag abs unrecognized."

I assume glmdir is the folder that QDEC creates with the DesignName that I set.

Doing this from qdec would be easier so hopefully there is a way to do that instead. Thanks!

On 1 April 2014 22:25, Tudor Popescu <tudor3@gmail.com mailto:tudor3@gmail.com> wrote:

Thanks Doug. I found older threads where you advise that
csdbase.y.ocn.dat can also be produced by running the simulation
from QDEC, but I didn't see any options for that in QDEC 1.5 (FS
5.3.0), after selecting my contrast and running the correction -
how can this be done?
Thanks!


On 1 April 2014 20:37, Douglas N Greve <greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>> wrote:


    Yes, run mri_glmfit-sim from the command line
    doug


    On 04/01/2014 02:26 PM, Tudor Popescu wrote:

        Hi Doug

        Apologies to insist, I just wasn't sure whether you'd seen
        my reply. To recap, qdec only used mri_glmfit (not
        mri_glmfit-sim) in my case, so I don/t have any *y.ocn*
        files. Can I still extract values from my clusters?
        Many thanks again
        Tudor


        On 31 March 2014 21:08, Tudor Popescu <tudor3@gmail.com
        <mailto:tudor3@gmail.com> <mailto:tudor3@gmail.com
        <mailto:tudor3@gmail.com>>> wrote:

            Looking in the command window, qdec seems to only produce
            mri_glmfit (but not mri_glmfit-sim) commands, which is
        probably
            why the file you mention is not being produced in my case


            On 31 March 2014 20:55, Douglas N Greve
        <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
            <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>> wrote:


                That is weird. the easiest thing is to just run
        mri_glmfit-sim
                using the
                same parameters as qdec is using. You can probably
        even get the
                command-line from the terminal window
                doug

                On 03/31/2014 02:39 PM, Tudor Popescu wrote:
                > Yes, in qdec I selected .05 for Monte-Carlo
        Null-Z and ran the
                > correction, which created the mc-z.abs.th13.*
        files (but no
                y.ocn). I
                > repeated the analysis just now - same result.
                >
                >
                > On 31 March 2014 20:13, Douglas N Greve
                <greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
        <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>
                > <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
                <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>>> wrote:
                >
                >
                >     And did you run the clusterwise correction
        for multiple
                comparisons?
                >     Either from qdec or with mri_glmfit-sim?
        That y.ocn file
                should be
                >     there
                >
                >     On 03/31/2014 02:02 PM, Tudor Popescu wrote:
                >     > 5.3.0
                >     >
                >     >
                >     > On 31 March 2014 19:07, Douglas N Greve
                >     <greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
                <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>
                <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
                <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>>
                >     > <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
                <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>
                >     <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
                <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>>>> wrote:
                >     >
                >     >
                >     >     what version of FS are you running
                >     >
                >     >
                >     >     On 03/31/2014 12:48 PM, Tudor Popescu
        wrote:
                >     >     > Hi Doug
                >     >     >
                >     >     > The only OCN files I have in my qdec
        correlation
                contrast
                >     folder
                >     >     > (after having run the MC-Z
        correction) are
                >     > mc-z.abs.th13.sig.ocn.annot
                >     >     > and mc-z.abs.th13.sig.ocn.mgh.
                >     >     >
                >     >     > How should I obtain
        mc-z.abs.th13.y.ocn.dat, and
                what command
                >     >     (if not
                >     >     > mri_glmfit-sim) should I use on it
        in order to
                extract values
                >     >     from the
                >     >     > two clusters?
                >     >     >
                >     >     >
                >     >     >
                >     >     > On 31 March 2014 18:35, Douglas N Greve
                >     >     <greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
                <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>
                >     <mailto:greve@nmr.mgh.harvard.edu
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                >     <mailto:greve@nmr.mgh.harvard.edu
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        <mailto:greve@nmr.mgh.harvard.edu>
                <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>>>
                >     >     > <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
                <mailto:greve@nmr.mgh.harvard.edu
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                >     <mailto:greve@nmr.mgh.harvard.edu
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                <mailto:greve@nmr.mgh.harvard.edu
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                >     >     <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
                <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>
                >     <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
                <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>>>>> wrote:
                >     >     >
                >     >     >
                >     >     >     The file you are looking for
        should be
                something like
                >     >     > mc-z.abs.th13.y.ocn.dat
                >     >     >     you dont need to run
        mri_glmfit-sim again
                >     >     >
                >     >     >     On 03/31/2014 12:25 PM, Tudor
        Popescu wrote:
                >     >     >     > Thanks Doug,
                >     >     >     > Presumably that file is
                mc-z.abs.th13.pdf.dat, which
                >     gets
                >     >     created
                >     >     >     > after running the null-z
        correction.
                >     >     >     > Based on the --help and on a
        previous thread
                >     >     >     >
                >     >     >
                >     >
                >          
         <https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg34602.html>,
                >     >     >     > I gathered it's this command
        that I need:
                >     >     >     > mri_glmfit-sim --glmdir
        mc-z.abs.th13.pdf.dat
                >     >     --cache 1.3
                >     >     >     > --sim-sign abs
                >     >     >     > I ran it from the SUBJECTS_DIR
        folder, the
                design folder
                >     >     or the
                >     >     >     > contrast folder
                (lh-Avg-pial_thickness-score-Cor),
                >     but in all
                >     >     >     cases it
                >     >     >     > says "ERROR: cannot find
                mc-z.abs.th13.pdf.dat"
                >     >     >     > Is this really the command I
        need to
                simply extract the
                >     >     values from
                >     >     >     > the 2 clusters found in the
        analysis?
                >     >     >     > THanks again
                >     >     >     > Tudor
                >     >     >     >
                >     >     >     >
                >     >     >     > On 31 March 2014 17:44,
        Douglas N Greve
                >     >     >     <greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
                <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>
                >     <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
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        <mailto:greve@nmr.mgh.harvard.edu>>>
                >     >     <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
                <mailto:greve@nmr.mgh.harvard.edu
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                >     <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
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        <mailto:greve@nmr.mgh.harvard.edu>>>>
                >     >     <mailto:greve@nmr.mgh.harvard.edu
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                >     <mailto:greve@nmr.mgh.harvard.edu
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                >     <mailto:greve@nmr.mgh.harvard.edu
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                >     >     >     >
        <mailto:greve@nmr.mgh.harvard.edu
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                <mailto:greve@nmr.mgh.harvard.edu
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                >     <mailto:greve@nmr.mgh.harvard.edu
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                >     >     <mailto:greve@nmr.mgh.harvard.edu
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                <mailto:greve@nmr.mgh.harvard.edu
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                >     <mailto:greve@nmr.mgh.harvard.edu
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                <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>>>
                >     >     > <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
                <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>
                >     <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
                <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>>
                >     >     <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
                <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>
                >     <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
                <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>>>>>> wrote:
                >     >     >     >
                >     >     >     >
                >     >     >     > If you ran the clusterwise
        correction,
                then
                >     there will
                >     >     be an
                >     >     >     > output file
                >     >     >     > with the data you want already
        there. Run
                >     mri_glmfit-sim
                >     >     >     --help to get
                >     >     >     > more info
                >     >     >     > doug
                >     >     >     >
                >     >     >     > On 03/31/2014 11:28 AM, Tudor
        Popescu
                wrote:
                >     >     >     > > Dear Freesurfer experts,
                >     >     >     > >
                >     >     >     > > After a qdec contrast that asked
                where does
                >     thickness
                >     >     >     correlate with
                >     >     >     > > behavioural score, I got 2
        significant
                >     clusters, and
                >     >     I would
                >     >     >     > like, for
                >     >     >     > > each of these clusters, to
        have a
                list of
                >     extracted
                >     >     average
                >     >     >     > thickness
                >     >     >     > > values (across the entire
        cluster),
                for each
                >     subject
                >     >     that
                >     >     >     I can then
                >     >     >     > > plot externally against the
        score
                values.
                >     >     >     > >
                >     >     >     > > I tried applying answers to
        previous
                similar
                >     >     questions with no
                >     >     >     > > success; some of them
        suggested using
                >     mri_segstats,
                >     >     >     however I'm not
                >     >     >     > > very clear on how annotation
        files
                are to be used
                >     >     (I've only
                >     >     >     > used the
                >     >     >     > > QDEC GUI), and I wasn't able
        to work
                out the
                >     syntax
                >     >     that would
                >     >     >     > give me
                >     >     >     > > what I wanted (assuming
        mri_segstats
                is in
                >     fact the
                >     >     command to
                >     >     >     > be used)
                >     >     >     > >
                >     >     >     > > Thanks for any help!
                >     >     >     > >
                >     >     >     > > Best wishes,
                >     >     >     > > Tudor
                >     >     >     > >
                >     >     >     > >
                >     >     >     > >
                _______________________________________________
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        <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>>>
                >     >     >     > >
                >     >
        https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
                >     >     >     >
                >     >     >     > --
                >     >     >     > Douglas N. Greve, Ph.D.
                >     >     >     > MGH-NMR Center
                >     >     >     > greve@nmr.mgh.harvard.edu
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                >     <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
                <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>>
                >     <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
                <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>
                >     <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
                <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>>>>>
                >     >     >     > Phone Number: 617-724-2358
                >     >     >     > Fax: 617-726-7422
                >     >     >     >
                >     >     >     > Bugs:
                > surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
        <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>

        <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
                >    
        <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
                >     >          
         <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
                >     >     >
         <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
                >     >     >     >
                >    
        <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
                >     >     >     > FileDrop:
        https://gate.nmr.mgh.harvard.edu/filedrop2
                >     >     >     >
        www.nmr.mgh.harvard.edu/facility/filedrop/index.html
        <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>

        <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
                >          
         <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
                >     >          
         <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
                >     >     >
                >          
         <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
                >     >     >     >
                >     >          
         <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
                >     >     >     > Outgoing:
                >     >     >     >
                >
        ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
                >     >     >     >
                >     >     >     >
                _______________________________________________
                >     >     >     > Freesurfer mailing list
                >     >     >     > Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
                <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>
                >     <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
                <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
                >     >     <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
                <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>
                >     <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
                <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>
                >     >     >
        <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
                <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>
                >     <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
                <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
                >     >     <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
                <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>
                >     <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
                <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>>
                >     >     >
        <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
                <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>
                >     <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
                <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
                >     >     <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
                <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>
                >     <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
                <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>
                >     >     >
        <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
                <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>
                >     <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
                <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
                >     >     <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
                <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>
                >     <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
                <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>>>
                >     >     >     >
                >
        https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
                >     >     >     >
                >     >     >     >
                >     >     >     > The information in this e-mail is
                intended only
                >     for the
                >     >     >     person to
                >     >     >     > whom it is
                >     >     >     > addressed. If you believe this
        e-mail
                was sent
                >     to you in
                >     >     >     error and
                >     >     >     > the e-mail
                >     >     >     > contains patient information,
        please
                contact the
                >     Partners
                >     >     >     > Compliance HelpLine at
                >     >     >     >
        http://www.partners.org/complianceline .
                If the
                >     e-mail was
                >     >     sent to
                >     >     >     > you in error
                >     >     >     > but does not contain patient
                information, please
                >     >     contact the
                >     >     >     > sender and properly
                >     >     >     > dispose of the e-mail.
                >     >     >     >
                >     >     >     >
                >     >     >     >
                >     >     >     >
                >     >     >     >
                _______________________________________________
                >     >     >     > Freesurfer mailing list
                >     >     >     > Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
                <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>
                >     <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
                <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
                >     >     <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
                <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>
                >     <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
                <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>
                >     >     >
        <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
                <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>
                >     <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
                <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
                >     >     <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
                <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>
                >     <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
                <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>>
                >     >     >     >
                >
        https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
                >     >     >
                >     >     >     --
                >     >     >     Douglas N. Greve, Ph.D.
                >     >     >     MGH-NMR Center
                >     >     > greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
                <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>
                >     <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
                <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>>
                >     <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
                <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>
                <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
                <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>>>
                >     >     <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
                <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>
                >     <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
                <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>>
                >     <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
                <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>
                <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
                <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>>>>
                >     >     >     Phone Number: 617-724-2358
                >     >     >     Fax: 617-726-7422
                >     >     >
                >     >     >     Bugs:
        surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
        <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>

        <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
                >    
        <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
                >     >          
         <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
                >     >     >
         <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
                >     >     >     FileDrop:
        https://gate.nmr.mgh.harvard.edu/filedrop2
                >     >     >
        www.nmr.mgh.harvard.edu/facility/filedrop/index.html
        <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>

        <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
                >          
         <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
                >     >          
         <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
                >     >     >
                >          
         <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
                >     >     >     Outgoing:
                >     >     >
        ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
                >     >     >
                >     >     >
        _______________________________________________
                >     >     > Freesurfer mailing list
                >     >     > Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
                <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>
                >     <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
                <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
                >     >     <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
                <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>
                >     <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
                <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>
                >     >     <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
                <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>
                >     <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
                <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
                >     >     <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
                <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>
                >     <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
                <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>>
                >     >     >
        https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
                >     >     >
                >     >     >
                >     >     >
                >     >     >
                >     >     >
        _______________________________________________
                >     >     > Freesurfer mailing list
                >     >     > Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
                <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>
                >     <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
                <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
                >     >     <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
                <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>
                >     <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
                <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>
                >     >     >
        https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
                >     >
                >     >     --
                >     >     Douglas N. Greve, Ph.D.
                >     >     MGH-NMR Center
                >     > greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
                <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>
                <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
                <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>>
                >     <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
                <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>
                <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
                <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>>>
                >     >     Phone Number: 617-724-2358
                >     >     Fax: 617-726-7422
                >     >
                >     >     Bugs:
        surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
        <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>

        <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
                >    
        <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
                >     >          
         <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
                >     >     FileDrop:
        https://gate.nmr.mgh.harvard.edu/filedrop2
                >     >
        www.nmr.mgh.harvard.edu/facility/filedrop/index.html
        <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>

        <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
                >          
         <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
                >     >          
         <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
                >     >     Outgoing:
                >     >
        ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
                >     >
                >     >
        _______________________________________________
                >     >     Freesurfer mailing list
                >     > Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
                <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>
                >     <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
                <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
                >     <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
                <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>
                >     <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
                <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>
                >     >
        https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
                >     >
                >     >
                >     >
                >     >
                >     >
        _______________________________________________
                >     > Freesurfer mailing list
                >     > Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
                <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>
                >     <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>
                <mailto:Freesurfer@nmr.mgh.harvard.edu
        <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
                >     >
        https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
                >
                >     --
                >     Douglas N. Greve, Ph.D.
                >     MGH-NMR Center
                > greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
        <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>
                <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
                <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>>
                >     Phone Number: 617-724-2358
                >     Fax: 617-726-7422
                >
                >     Bugs:
        surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
        <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>

        <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
                >    
        <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
                >     FileDrop:
        https://gate.nmr.mgh.harvard.edu/filedrop2
                >
        www.nmr.mgh.harvard.edu/facility/filedrop/index.html
        <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>

        <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
                >          
         <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
                >     Outgoing:
                >
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                --
                Douglas N. Greve, Ph.D.
                MGH-NMR Center
        greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>
        <mailto:greve@nmr.mgh.harvard.edu
        <mailto:greve@nmr.mgh.harvard.edu>>
                Phone Number: 617-724-2358
                Fax: 617-726-7422

                Bugs:
        surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
        <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>

        <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
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        <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
                Outgoing:
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    -- 
    Douglas N. Greve, Ph.D.
    MGH-NMR Center
    greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
    Phone Number: 617-724-2358
    Fax: 617-726-7422

    Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
    <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
    FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
    www.nmr.mgh.harvard.edu/facility/filedrop/index.html
    <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
    Outgoing:
    ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/