Still get the same error:
WARNING: file /Users/jasminalves/Desktop/data/40/00010001 does not contain a Siemens ASCII header
has this file been anonymized?
ERROR: cannot unpack mosiacs without ASCII header
The error I get when running in nifti format is actually found in the log file.
ERROR: /Users/jasminalves/Desktop/data/40/DTI.nii.gz is not a dicom file or some other problem
On Tue, Mar 15, 2016 at 9:01 AM, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:
if you run mri_convert 00010001 deleteme.nii what happens?
what is the error when running with nifti?
On 03/14/2016 05:59 PM, Jasmin Alves wrote:
Dear Freesurfer experts,
FREESURFER_HOME: /Applications/freesurfer
Build stamp: freesurfer-Darwin-lion-stable-pub-v5.3.0
Kernel info: Darwin 14.5.0 x86_64
I received the following error while running the dt_recon --i 00010001 --s 40 --o /Users/jasminalves/Desktop/data/FREESURFER/40.
The participant is 40.
And I received the following error:
WARNING: file /Users/jasminalves/Desktop/data/40/00010001 does not contain a Siemens ASCII header has this file been anonymized?
ERROR: cannot unpack mosiacs without ASCII header
I did notice on previous threads this is a common error that occurs, but the files I have were directly exported from our siemens scanner via Osirix. I also tried running dt_recon using nifti format but that resulted in an error as well. Is there anything else I can do?
Thanks,
Jasmin
-- Jasmin Alves Predoctoral Student Medical Biology Graduate Program University of Southern California jalves@usc.edu mailto:jalves@usc.edu
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