It looks like there is something wrong with your dicom file because it does not have an image orientation tag (a very basic piece of information). Are you sure it is the right dicom? You can also try converting it to nifti with dcm2niix then feeding the nifti into recon-all
On 8/20/19 9:59 AM, Троицкий Антон Александрович wrote:
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Hello FreeSurfer Developers,
I a beginner freesurfer user. It is my first patient that I try to process.
The patient data was obtained on Philips MRI Achieva 3.0 T with dStream application.
I performed
/Applications/freesurfer/bin/recon-all -i /Users/anton.troitskii/Documents/FreeSurferData/Patients_input/2018-08-19/DICOM/IM_0001.dcm -subject Test1 -all
The process started and an error occurred. Does anyone have any thoughts on how to trouble-shoot this one? Also, Ive attached the recon-all.log in case it's of any use.
- FreeSurfer version: freesurfer-Darwin-OSX-stable-pub-v6.0.0
- Platform: macOS Sierra 10.12.6
- uname -a: Darwin mac-2ap023-2.fccho-moscow.ru
http://mac-2ap023-2.fccho-moscow.ru 16.7.0 Darwin Kernel Version 16.7.0: Thu Jan 11 22:59:40 PST 2018; root:xnu-3789.73.8~1/RELEASE_X86_64 x86_64 4) recon-all.log: see attached
Best regards, Anton Troitskii.
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