Hi Cathy What version are you running? If 5.1 you will need Nick's updated recon-all Cheers Bruce
On Dec 3, 2012, at 5:33 AM, Catherine Bois clb542@york.ac.uk wrote:
Hi,
I am currently in the process of reconstructing my brains after edits. However, the brains keep being reconstructed with large portions of brain missing/cerebellum missing; ie they are much worse than before I edited them. However, I am sure that I have only put control points in white matter areas; ie not partial volume, so I am very confused as to why this is happening; in one brain for example I had not put any cotnrol points (only made a very small white matter edit). Has this happened to anyone else before? Am i somehow running the wrong command somewhere? Could the watershed be wrong in the script, ie accidentally changed?
Grateful for help,
Regards Cathy _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer