I think I fixed this in 7.2. Can you try that?
On 9/3/2021 12:11 PM, ChristianBauer wrote:
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Hello freesurfer help team!
I am using the command reg-feat2anat but I get the error message:
tkregister2_cmdl_cmdl: Command not found.
Here is my full command
Fri Sep 3 17:56:20 CEST 2021 /Users/christianbauer/Desktop/Imogen2bids_copy/freesurfer/my_subjects /Applications/freesurfer/7.1.1/bin/reg-feat2anat --feat /Users/christianbauer/Desktop/Imogen2bids_copy/sub-032/func/motion_run_test_1.gfeat/cope1.feat --subject 032 Darwin Christians-MacBook-Pro.local 19.6.0 Darwin Kernel Version 19.6.0: Tue Jun 22 19:49:55 PDT 2021; root:xnu-6153.141.35~1/RELEASE_X86_64 x86_64 example_func ras_good_flag 1
Initializing exf2anat with header tkregister2_cmdl_cmdl --targ /Users/christianbauer/Desktop/Imogen2bids_copy/freesurfer/my_subjects/032/mri/brainmask.mgz --mov /Users/christianbauer/Desktop/Imogen2bids_copy/sub-032/func/motion_run_test_1.gfeat/cope1.feat/example_func.nii.gz --reg /Users/christianbauer/Desktop/Imogen2bids_copy/sub-032/func/motion_run_test_1.gfeat/cope1.feat/reg/freesurfer/anat2exf.register.dat.init --fslregout /Users/christianbauer/Desktop/Imogen2bids_copy/sub-032/func/motion_run_test_1.gfeat/cope1.feat/reg/freesurfer/exf2anat.init.fsl.mat --regheader --noedit tkregister2_cmdl_cmdl: Command not found.
Many thanks,
Christian
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