Re: [Freesurfer] wm edits not incorporated

Dear Bruce,

I just transferred subject r02.tar.gz.

Again, wm.mgz edits (all deleted voxels, no additions) are not incorporated on reruns using any of the recon-all -autorecon-wm -aitorecon3 recon-all -autorecon2 -autorecon3 recon-all -make all

For example, the complete command line for a rerun on this particular subject is

recon-all -autorecon2-wm -autorecon3 -3T -bigventricles -cw256 -subjid r02 -parallel > output.txt &

Here are some of the edited voxels which are not excluded from the wm on rerun:

-40.14, -2.67, 116.29 coronal slice 132 12.73, -23.67, 126.16 coronal slice 171 14.05, 12.33, 11.61 coronal slice 147

I mention this is not the only subject where I have this problem. Thank you for your help. Octavian