External Email - Use Caution
OK - fill out the form on this page and download the license.txt file, https://secure-web.cisco.com/1x188geQEK3Rrhy9C_TF54vhIgmM9qi1beEnk0Zgdzy4QT7... You can copy license.txt to your home directory, e.g., if it’s in your Downloads folder from downloading via the browser, $ cp $HOME/Downloads/license.txt $HOME/. Then you can set the environment variable FS_LICENSE to it’s location, $ export FS_LICENSE=$HOME/license.txt … check it is readable … $ cat $FS_LICENSE You can put the license.txt anywhere just as long as FS_LICENSE is set to point to it.
Then try your commands again. - R..
On Sep 26, 2021, at 14:10, Banik, Rana <rana.banik@vanderbilt.edu> wrote: External Email - Use Caution External Email - Use Caution I installed freesurfer here: banikr2@banikr:~$ which freesurfer /usr/local/freesurfer/bin/freesurferI am getting the following error while running recon-all:banikr2@banikr:~$ export SUBJECT_DIR=/home/banikr2/273_p banikr2@banikr:~$ recon-all -s sub273 -i 273_p/273_MR.nii mkdir: cannot create directory '/usr/local/freesurfer/subjects/sub273': Permission denied mkdir: cannot create directory '/usr/local/freesurfer/subjects/sub273': Permission denied mkdir: cannot create directory '/usr/local/freesurfer/subjects/sub273': Permission denied cp: cannot create regular file '/usr/local/freesurfer/subjects/sub273/scripts/build-stamp.txt': No such file or directory cat: /usr/local/freesurfer/subjects/sub273/scripts/build-stamp.txt: No such file or directory INFO: FreeSurfer build stamps do not match Subject Stamp: Current Stamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551I found this from previous troubleshoot emails of freesurfer here: MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to behttps://http://secure-web.cisco.com/10nZ_VGLWCVDFmlydatYBlFkdXTaJEnvkpD2ONB7... I performed accordingly. Any suggestions?Rana Banik_______________________________________________Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://secure-web.cisco.com/1OG3BAo0lmU7cE8cn9LvmHGOEYJzbtbgtwdIvUeIwpOy9kX...