some times the compression/decompression routines will store intermediate files in /tmp or /scratch or somewhere else. If its target location fills up, then you can get errors, so check the disk space in those locations
On 10/24/17 9:34 AM, Iglesias Gonzalez, Eugenio wrote:
Wow never seen that before. Does the output look OK? (segmentation and volumes)
Cheers,
/Eugenio
--
Juan Eugenio Iglesias
ERC Senior Research Fellow
Translational Imaging Group
University College London
*From: *freesurfer-bounces@nmr.mgh.harvard.edu on behalf of "Maksimovskiy, Arkadiy" AMAKSIMOVSKIY@mclean.harvard.edu *Reply-To: *Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Date: *Tuesday, 24 October 2017 at 14:31 *To: *"freesurfer@nmr.mgh.harvard.edu" freesurfer@nmr.mgh.harvard.edu *Subject: *[Freesurfer] segmentHA znzread failed error
Dear Hipp. Segmentation experts,
I keep getting the following error when running the segmentHA script from the Dev. Version. Wondering if this is serious or something that can be ignored, as the process keeps running to the end:
Transforming points
znzreadInt: znzread failed
No such file or directory
znzreadInt: znzread failed
No such file or directory
znzreadInt: znzread failed
No such file or directory
znzreadInt: znzread failed
No such file or directory
threshold mask volume at 0.5
znzreadInt: znzread failed
No such file or directory
znzreadInt: znzread failed
No such file or directory
znzreadInt: znzread failed
No such file or directory
znzreadInt: znzread failed
No such file or directory
znzreadInt: znzread failed
No such file or directory
znzreadInt: znzread failed
No such file or directory
znzreadInt: znzread failed
No such file or directory
threshold mask volume at 0.5
znzreadInt: znzread failed
No such file or directory
znzreadInt: znzread failed
Thank you for your help,
Arkadiy
--
Arkadiy L. Maksimovskiy, Ph.D.
Postdoctoral Research Fellow McLean Imaging Center, McLean Hospital Department of Psychiatry, Harvard Medical School
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