If you're using the newest stream (ie, as of a week ago), then run
1. recon-all -autorecon1 2. cp yourstrippedbrain.mgz brainmask.mgz # this will overwrite brainmask.mgz 3. run the remaining recon-all stages
doug
wuhappy@seu.edu.cn wrote:
Hi,
I already have the skullstriped brains data on the original image space. The skullstriped data is good. I want to know whether I can use the skullstripped data directly instead of starting from the original T1 images in FreeSurfer.
Thank you very much!
-Steven
Ph.D.
Laboratory of Image Science & Technology (LIST), Department of Biomedical Engineering, Southeast University, Nanjing, Jiangsu Province, P.R. of China,210096 Phone: +86-25-3794249 Fax: +86-26-3792698
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer