Dear Erik I’m not sure I understand. What does your output file look like? Cheers, /Eugenio
Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://www.jeiglesias.com
On Aug 27, 2021, at 16:14, Erik O'Hanlon <OHANLOER@tcd.iemailto:OHANLOER@tcd.ie> wrote:
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Dear FS experts,
I've run a lognitudinal hippocampal and amygdala analysis. I jave managed to extract the amygdala and the head body tail subfields bui I'm wondering how to extract the regular FS60 volume measures? I have the three versions (FS60, HBT and CA mgz files in my long mri directories but I just keep getting the HBT volumes.
I tried
quantifyHAsubregions.sh hippoSf T1.long Outputfilename
and that gives me the HBT measures
What command do I use to pull out the FS60 subfield measures from my long mri directories?
Thanks for any help.
Erik _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1KpjtWxWHIKAUquh4Uydr2e7YoRAgRF-HVDiv4BqhdUa-0X...