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Attached are a few snapshots of the ?.orig surfaces (pink), pial (red), and wm (yellow)
On Fri, Sep 25, 2020 at 7:46 AM Douglas N. Greve dgreve@mgh.harvard.edu wrote:
Can you show it with the ?h.orig surfaces? Those should closely follow the boundary of the wm.mgz volume
On 9/23/2020 2:11 PM, Jake Jensen wrote:
External Email - Use CautionHello,
I am attempting to edit a subject, but upon removing voxels where the WM and pial surfaces should not be, the WM surface does not receed (pictures are attached).
I have attempted this with -all and -autorecon2, running it again from the original 001.mgz file, as well as attempting to run it from the beginning with -clean. The end result is consistently the same, as seen in the attached images. Additionally, it is strange that the WM surface crosses the pial.
I could not seem to find a solution to this in the archives.
FreeSurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c Platform: OSX mojave -all -autorecon2
Recon all log attached
Thank you!
-Jacob
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