External Email - Use Caution
Dear Sir or Madam, Hope you are doing well! Thank you very much for your contribution to the freesurfer software which offers great help to research in the neuroimaging area. However, I met a problem when using it and I hope you can help me with it. The freesurfer version I use is freesurfer-linux-centos7_x86_64-7.1.1.tar.gz. I hope to implement AnatomiCuts with my own data which is tractography data (.vtk) reconstructed from HCP dataset with ukf tractography method. When I tried to run the dmri_AnatomiCuts command (the complete command is: dmri_AnatomiCuts -s wmparc.nii.gz -f 100307_ukf_pp.vtk -c 100 -n 14 -e 50 -o output -d s), the following messages appears:
ups ups ups ups ups ups ... queue emplace 3894 queue emplace 0
It seems that the algorithm is running. But it just stays here and I cannot get the final results even with input data of only 100 fibers divided into 2 clusters. I am really confused what is going on here. Are there any special requirements for the input data? Your help will be greatly appreciated.
Regards, Yuqian