External Email - Use Caution
I tried by specicying the subjects name, by following the below command.
aparcstats2table --hemi lh \ --subjects 004 021 040 067 080 092 \ --meas thickness \ --parc aparc.a2009s \ --tablefile lh.aparc.a2009.thickness.tabl
But still I got the same error.
On Sun, Jan 19, 2020, 10:30 PM freesurfer-request@nmr.mgh.harvard.edu wrote:
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Today's Topics:
- RES: Re: freesurfer container - freeview error (marcosm@hucff.ufrj.br)
- registration of dwi images (Sam W)
- Re: registration of dwi images (Yendiki, Anastasia)
- Project hippocampus to inflated 3D model? (Mohammad Rashid)
- Re: aparcstats2table error (Devika K)
- Re: Project hippocampus to inflated 3D model? (Bruce Fischl)
- Re: aparcstats2table error (Bruce Fischl)
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Message: 2 Date: Sun, 19 Jan 2020 00:52:10 +0100 From: Sam W samfmri@gmail.com Subject: [Freesurfer] registration of dwi images To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Message-ID: < CAFYEHVvrxw-P0VWvqeiA_fMnUrMavmSb9wts3zDhLGFVZHC2ow@mail.gmail.com> Content-Type: text/plain; charset="utf-8"
External Email - Use CautionHello! I have run eddy on all my dwi images and then run bbregister using the first b0 image as the source image. The b0 image is now well aligned with the anatomical image but how can I apply the same transformation to all other dwi images in my dataset?
After eddy correction I extracted the first b0 image (nodif.nii.gz) and run the bbregister command: bbregister --s sub001 --mov /home/samm/nodif.nii.gz --reg /home/samm/nodiffb2orig.dat --dti --init-fsl --o /home/samm/registered_b0.nii.gz
Thanks! Sam