can you email us the full command line and screen output? On Sun, 19 Jan 2020, Devika K wrote:

External Email - Use Caution

I tried  by specicying the subjects name, by following  the below command.

aparcstats2table --hemi lh \ --subjects 004 021 040 067 080 092 \ --meas thickness \ --parc aparc.a2009s \ --tablefile lh.aparc.a2009.thickness.tabl

But still I got the same error.

On Sun, Jan 19, 2020, 10:30 PM freesurfer-request@nmr.mgh.harvard.edu wrote: Send Freesurfer mailing list submissions to         freesurfer@nmr.mgh.harvard.edu

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     1. RES: Re:  freesurfer container - freeview error
        (marcosm@hucff.ufrj.br)
     2. registration of dwi images (Sam W)
     3. Re: registration of dwi images (Yendiki, Anastasia)
     4. Project hippocampus to inflated 3D model? (Mohammad
  Rashid)
     5. Re: aparcstats2table error (Devika K)
     6. Re: Project hippocampus to inflated 3D model? (Bruce
  Fischl)
     7. Re: aparcstats2table error (Bruce Fischl)


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  Date: Sun, 19 Jan 2020 00:52:10 +0100
  From: Sam W <samfmri@gmail.com>
  Subject: [Freesurfer] registration of dwi images
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          External Email - Use Caution       

  Hello!
  I have run eddy on all my dwi images and then run bbregister
  using the
  first b0 image as the source image.
  The b0 image is now well aligned with the anatomical image but
  how can I
  apply the same transformation to all other dwi images in my
  dataset?

  After eddy correction I extracted the first b0 image
  (nodif.nii.gz) and run
  the bbregister command:
  bbregister --s sub001 --mov /home/samm/nodif.nii.gz --reg
  /home/samm/nodiffb2orig.dat --dti --init-fsl --o
  /home/samm/registered_b0.nii.gz

  Thanks!
  Sam