11 Feb
2020
11 Feb
'20
9:26 a.m.
External Email - Use Caution
Dear Freesurfer experts,
I ran recon-all on 100 subjects. Around 20 of them needed manual corrections of the pial surface on the brainmask.mgz. 1.) Can I run the command: "recon-all -make all- s <subject>" on all 100 subjects and it will only recon-all the manually edited ones or do I need to run it individually for the 20 subjects? 2.) Do I need to add the flags which I used for the original recon-all command to the "recon-all -make all- s <subject>, e.g. -qcache -T3 -hippocampal subfields etc?
Many thanks!
/Ben
--
____________________________________
Benjamin Victor Ineichen, MD PhD
Karolinska Institutet
Center for Molecular Medicine
Stockholm, Sweden
ineichen@protonmail.ch
+41 76 391 04 01
Dr. med. et Dr. rer. nat. ETH Benjamin Victor Ineichen
Karolinska Institutet
Center for Molecular Medicine
Stockholm, Sweden
ineichen@protonmail.ch
+41 76 391 04 01