Use
mri_binarize --i aseg.mgz --match 17 --binval -1 --o your.lefthippo.nii.gz
On 4/6/17 6:00 AM, Dilip Puri wrote:
Hi everyone,
I am working on Hippocampus segmentation using Neural Networks for that I need labeled images of Hippocampus corresponding to original images.
I am using OASIS Dataset for this. I want to generate labeled images using FREESURFER. Is there any way to label each 3D co-ordinate HippoCampus -1 Otherwise - 0
Here are sample files link https://drive.google.com/drive/folders/0B6rH1c6LupG_b3I4WUJ1RWZCbnM?usp=sharing
Kindly help me!
Dilip Puri http://dilippuri.github.io IIIT Vadodara http://www.iiitvadodara.ac.in
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer