External Email - Use Caution
thank you for your quick response - I will!
On Mon, Nov 26, 2018 at 1:12 PM Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Katie
I think that should be ok, but of course the only way to know for sure is to try!
cheers Bruce
On Mon, 26 Nov 2018, Kathryn Fitzgerald wrote:
External Email - Use CautionDear FS experts,
I was wondering if it is possible to run recon-all (e.g. autorecon2,
autorecon3) on skull-stripped i
mages which have gone through N4 correction.
Would it be okay to run?
recon-all -i sub1.nii.gz -subjid s1 -autorecon1 -sd . -noskullstrip
I saw the work around for already skull-stripped images, but I wasn't
sure if this would be appropri
ate for images which have also been corrected by N4. Or is there another
way I should approach this?
Thank you for the help in advance!
Kind regards, Katie
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