Re: [Freesurfer] Freesurfer Hippocampal Subfield Misalignment

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Hi Eugenio,

Yes, I can - which files would you like and where should I upload them?

Thanks, Jenna

________________________________ From: Jenna Katherine Blujus jkblujus@uwm.edu Sent: Monday, July 13, 2020 6:29 PM To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: Re: Freesurfer Hippocampal Subfield Misalignment

Hi Eugenio,

I reran the segmentations after editing the aseg.presurf.mgz files and copying the edited HC to the wmparc.mgz files but the segmentations did not improve. Is there anything else you would suggest to do? Here is an example of one of my subjects. As you can see the left segmentation is not aligned with the left hippocampus.

Thanks, Jenna