They are bright in orig.mgz. You can see in the pictured attachments
On Mon, Oct 21, 2013 at 1:51 PM, Bruce Fischl fischl@nmr.mgh.harvard.eduwrote:
why are they so bright? Are they that way before intensity normalization (e.g. in the orig.mgz)?
On Mon, 21 Oct 2013, Jonathan Holt wrote:
FS experts,
Freesurfer has been omitting extremely bright/intense white and grey matter voxels (avg intensity ~150). Mostly this happens in areas that should be encompassed by the surfaces. Is there a way to tell recon-all to include these areas?
I fear it may believe they are dura because of the similar intensity values.
jon
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