what about the probabilistic brain defacing?
Thanks
On Nov 10, 2005, at 12:25 PM, Bruce Fischl wrote:
if you use surface recons
Dale, A.M. and M.I. Sereno (1993) Improved localization of cortical activity by combining EEG and MEG with MRI cortical surface reconstruction: A linear approach. Journal of Cognitive Neuroscience 5:162-176.
Segonne F, Dale, AM, Busa E, Glessner M, Salvolini U, Hahn HK, Fischl B, A Hybrid Approach to the Skull-Stripping Problem in MRI. NeuroImage, 22, pp. 1160-1075, 2004
Dale, A.M., Fischl, Bruce, Sereno, M.I., (1999). Cortical Surface-Based Analysis I: Segmentation and Surface Reconstruction. NeuroImage 9(2):179-194
Fischl, Bruce, Sereno, M.I., Dale, A.M., (1999). Cortical Surface-Based Analysis II: Inflation, Flattening, and a Surface-Based Coordinate System. NeuroImage 9(2):195-207
Fischl, Bruce, Liu, Arthur, and Dale, A.M., (2001). Automated Manifold Surgery: Constructing Geometrically Accurate and Topologically Correct Models of the Human Cerebral Cortex. IEEE Transactions on Medical Imaging, 20(1):70-80
if you do inter-subject spherical averaging
Fischl, Bruce, Sereno, M.I., Tootell, R.B.H., and Dale, A.M., (1999). High-resolution inter-subject averaging and a coordinate system for the cortical surface. Human Brain Mapping, In Press
if you do a thickness study
Fischl, Bruce, and Dale, A.M., (2000). Measuring the Thickness of the Human Cerebral Cortex from Magnetic Resonance Images. Proceedings of the National Academy of Sciences, 97:11044-11049.
if you use cortical parcellations
Fischl B, van der Kouwe A, Destrieux C, Halgren E, Ségonne F, Salat DH, Busa E, Seidman LJ, Goldstein J, Kennedy D, Caviness V, Makris N, Rosen B, Dale, AM Automatically Parcellating the Human Cerebral Cortex. Cerebral Cortex, 2004; 14:11-22.
if you do subcortical segmentation
Fischl B, Salat DH, van der Kouwe AJW, Makris N, Ségonne F, Dale AM. Sequence-Independent Segmentation of Magnetic Resonance Images. NeuroImage 23 Suppl 1, S69-84.
Fischl B, Salat D, Busa E, Albert M, Dieterich M, Haselgrove C, van der Kouwe A, Killiany R, Kennedy D, Klaveness S, Montillo A, Makris N, Rosen B, Dale A.M.. Whole brain segmentation. Automated labeling of neuroanatomical structures in the human brain. Neuron. 2002; 33(3): 341-355.
Hi All, If I wanted to reference freesurfer, what would the appropriate reference be now that the "manual" is now a wiki?
Thanks, Tracy
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Tracy Wang Research Assistant Cognitive Neuroscience Laboratory
Washington University Department of Psychology, Campus Box 1125 One Brookings Drive St. Louis MO 63130-4899 314-935-5019 twang@artsci.wustl.edu