Dear. Freesurfer experts.
Hi.
i appreciate your help in advance!
I'm using freesurfer version 5.3.0.
I tried selxavg3-sess and got the error dimension mismatch between mask and 2th run. Actually, the number of slices of the 1st run and the rest are different. Is it the reason why I get this error message? Please let me know what I should do to correct this error!
Below are command and error lines.
command: selxavg3-sess -s $SUBJECT -analysis retino -df sessdirfile
error: -------------------------------------------------------------- selxavg3-sess logfile is /home/jbang/Projects/replay/log/log/selxavg3-sess-bold_retino-retino-160309115326.log -------------------------------------------------------------- ------------------------------------------- /home/jbang/Projects/replay/epi/replay06 Wed Mar 9 11:53:33 EST 2016 anadir = /home/jbang/Projects/replay/epi/replay06/bold_retino/retino DoGLMFit = 1 DoContrasts = 1 UpdateNeeded = 1 ------------------------------------------ ------- matlab output -------------------- Warning: Unable to open display 'iconic'. You will not be able to display graphics on the screen.
< M A T L A B (R) > Copyright 1984-2009 The MathWorks, Inc. Version 7.8.0.347 (R2009a) 64-bit (glnxa64) February 12, 2009
To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com.
>> >> >> >>
sxa3pwd =
/home/jbang/Projects/replay/log
sxa3cmd =
/usr/local/freesurfer//fsfast/bin/selxavg3-sess -s replay06 -analysis retino -df sessdirfile
/usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m
>> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >>
#@# replay06 ############################### /home/jbang/Projects/replay/epi/replay06 ------------------------- $Id: fast_selxavg3.m,v 1.100.2.2 2012/11/30 18:40:38 greve Exp $ /usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m /usr/local/freesurfer/fsfast/toolbox/fast_ldanaflac.m /usr/local/freesurfer/matlab/MRIread.m ------------------------- outtop = /home/jbang/Projects/replay/epi Extension format = nii.gz 1 HorVer.mat 2 UpperLower.mat nruns = 4 autostimdur =
outanadir = /home/jbang/Projects/replay/epi/replay06/bold_retino/retino Found 62211/180708 (34.4) voxels in mask Creating Design Matrix ... creation time = 0.008 sec DoMCFit = 0 ntptot = 480, nX = 28, DOF = 452 Saving X matrix to /home/jbang/Projects/replay/epi/replay06/bold_retino/retino/Xtmp.mat XCond = 199.451 (normalized) Computing compensation for resdual AR1 bias 1 -0.5 -0.499283 (t=0.024843) 2 -0.25 -0.268756 (t=0.047925) 3 0 -0.0441607 (t=0.069497) 4 0.25 0.16942 (t=0.093633) 5 0.5 0.359032 (t=0.117433) AR1 Correction M: 0.0657489 1.15858 Computing contrast matrices OLS Beta Pass run 1 t= 0.0 Global Mean 855.07 run 2 t= 3.1 ERROR: dimension mismatch between mask and 2th run
ERROR: fast_selxavg3() failed\n
Thank you very much!
Best, Ji Won