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Dear Freesurfer team,
I'm studying in longitudinal hippocampal changes. Currently I have output from recon-all with T1 and T2-FLAIR across each subject for each time point and output from the longitudinal pipeline for each subject. Now, I want to run the longitudinal hippocampal subfield but the documentation states that it is for T1 scans only. Can I run segmentHA_T1_long.sh with above output or do I need to rerun all above process with only T1 scans.
Thank you.
Best regards, Shizuka