Your input here is a localizer image:
Protocol t2_haste_localizer_p2
On Mon, Mar 19, 2018 at 12:51 PM, Z Hessam z.hessam@gmail.com wrote:
hello, i have problem again with a new data set. this is the recon-all.log file in attach
thanks a lot
On Fri, Feb 9, 2018 at 2:22 PM, Z Hessam z.hessam@gmail.com wrote:
thank you for your attention
regards
On Fri, Feb 9, 2018 at 1:04 AM, Bruce Fischl fischl@nmr.mgh.harvard.edu
wrote:
looks like the acquisition is not what you would need to run FreeSurfer
on. Looking at the log I think your input is a T2-weighted image (we require a T1) with a slice thickness of 9mm (we require all voxel dimensions to be <=1.5mm or so)
cheers Bruce
On Thu, 8 Feb 2018, Z Hessam wrote:
sure... with first code i convert *.dcm files. with second code i want to segment data:
- recon-all -i /media/hessam91/driver2/data/1.dcm -autorecon1 -subjid
dyegmoh
- recon-all -s dyegmoh -all
and the log file is attached(recon-all_dyegmoh.log).
On Thu, Feb 8, 2018 at 7:05 PM, Bruce Fischl <
fischl@nmr.mgh.harvard.edu> wrote:
can you send us the complete command you ran, the entire screen
output and the
recon-all.log file? cheers Bruce On Thu, 8 Feb 2018, Z Hessam wrote: Hello FreeSurfer develpers I'm attempting to run " recon-all " command on a file of
dicom data, and
encounter with an error command: recon-all -s dyegmoh exited with ERRORS at Thu Feb 8
17:08:16 +0330 2018
how can i understand why this error happens and what
should i do to solve
it?
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