Dear FSexperts,
the overlay scale bar consists of a colored and a gray part. Unfortunately, the gray in the binary colored represetation of the brain curvature is exactly the same as in the overlay scale bar. Is it possible to change the color in the scale bar background to white?
Regards Joerg
On Fri, 31 May 2013 16:20:24 -0400 (EDT) Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
mri_normalize is a binary so you can't, just recon-all.
On Fri, 31 May 2013, Caspar M. Schwiedrzik wrote:
I only find flags for mri_normalize and mri_segment in recon-all, and I have trouble reading the contents mri_normalize with a regular text editor. caspar
2013/5/31 Bruce Fischl fischl@nmr.mgh.harvard.edu Hi Caspar
it changes some parameters to the intensity normalization and segmentation to account for the lower SNR and increased CNR in the mprage. You'll need to look in the recon-all script for the details cheers Bruce On Thu, 30 May 2013, Caspar M. Schwiedrzik wrote: Hi! Is there more documentation on what settings the mprage flag enables in recon-all? Specifically, I would be interested which individual steps it affects and what the parameters are for each of the steps. Thanks! CasparThe information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.