Dear all,
I'm trying to run a retinotopy analysis in several subjects but it crashed with an error in one subject. I ran this command line:
selxavg3-sess -a rtopy.HS.rh -s SUBJ09
and this is the last part of the output with the error message. Any help would be much appreciated.
Best Francesca
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>> >> >> >>
sxa3pwd =
/usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed
sxa3cmd =
/usr/local/freesurfer/fsfast/bin/selxavg3-sess -a rtopy.HS.rh -s SUBJ09
/usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m
>> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >>
#@# SUBJ09 ############################### /usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed/SUBJ09 ------------------------- $Id: fast_selxavg3.m,v 1.100.2.2 2012/11/30 18:40:38 greve Exp $ /usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m /usr/local/freesurfer/fsfast/toolbox/fast_ldanaflac.m /usr/local/freesurfer/matlab/MRIread.m ------------------------- outtop = /usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed Extension format = nii.gz nruns = 4 autostimdur =
outanadir = /usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed/SUBJ09/bold/rtopy.HS.rh Found 110059/126364 (87.1) voxels in mask Creating Design Matrix ... creation time = 0.005 sec DoMCFit = 1 ntptot = 960, nX = 36, DOF = 924 Saving X matrix to /usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed/SUBJ09/bold/rtopy.HS.rh/Xtmp.mat Error using svd Input to SVD must not contain NaN or Inf.
Error in cond (line 36) s = svd(A);
Error in fast_selxavg3 (line 279) XCond = cond(XtX);